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List of works by Eric Coissac

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

scientific article published on 7 December 2022

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

scientific article

An in silico approach for the evaluation of DNA barcodes

scientific article

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

scientific article

Ancient environmental DNA reveals shifts in dominant mutualisms during the late Quaternary

scientific article published on 10 January 2018

Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows

scientific article published on 17 July 2009

Assessment of the food habits of the Moroccan dorcas gazelle in M'Sabih Talaa, west central Morocco, using the trnL approach

scientific article

Associations between inverted repeats and the structural evolution of bacterial genomes

scientific article

Bioinformatic challenges for DNA metabarcoding of plants and animals

scientific article

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

scientific article

Body size determines soil community assembly in a tropical forest

scientific article published on 22 November 2018

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

article

Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data

scientific article

Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity

scientific article

Comparative genomics of three strains of Ehrlichia ruminantium: a review.

scientific article published on October 2006

Comparing three types of dietary samples for prey DNA decay in an insect generalist predator.

scientific article published on 6 March 2018

Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis

scientific article published on 22 May 2015

Conservation genetics of cattle, sheep, and goats

scientific article published on February 2011

Conservation of the prion properties of Ure2p through evolution

scientific article

Convergent genomic signatures of domestication in sheep and goats

scientific article published on 6 March 2018

Correction: Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons

scientific article published on 13 April 2016

DNA from soil mirrors plant taxonomic and growth form diversity

scientific article

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

scientific article

DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents

scientific article published on 4 February 2015

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

scientific article

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

scientific article published on 29 April 2019

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

scientific article (publication date: 29 November 2016)

Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons

scientific article

Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium

scientific article published on 19 June 2007

Effect of DNA extraction and sample preservation method on rumen bacterial population.

scientific article

Effects of organochlorines on microbial diversity and community structure in Phragmites australis rhizosphere

scientific article published on 7 February 2014

Environmental DNA.

scientific article published in April 2012

Evaluating the impact of domestication and captivity on the horse gut microbiome.

scientific article published on 14 November 2017

Fifty thousand years of Arctic vegetation and megafaunal diet

scientific article (publication date: 6 February 2014)

From barcodes to genomes: extending the concept of DNA barcoding

scientific article published on 28 January 2016

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

scientific article

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost

scientific article

Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family

scientific article published on 2 April 2014

Glacial survival of boreal trees in northern Scandinavia

scientific article published in March 2012

High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

scientific article published on 4 November 2022

How to limit false positives in environmental DNA and metabarcoding?

scientific article published in May 2016

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

scientific article

Inferring neutral biodiversity parameters using environmental DNA data sets

scientific article

Investigating the genetics of Bti resistance using mRNA tag sequencing: application on laboratory strains and natural populations of the dengue vector Aedes aegypti

scientific article published on 31 August 2013

Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding

scientific article

Long livestock farming history and human landscape shaping revealed by lake sediment DNA.

scientific article published in January 2014

Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra

Mike Bruford (1963–2023)

scientific article published in 2023

Mitochondrial Phylogenomics Resolves the Global Spread of Higher Termites, Ecosystem Engineers of the Tropics

scientific article

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

scientific article

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

scientific article

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

scientific article published on 19 October 2015

OligoTag: a program for designing sets of tags for next-generation sequencing of multiplexed samples

scientific article

PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula).

scientific article

Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar

scientific article (publication date: October 2013)

Plant functional traits reveal the relative contribution of habitat and food preferences to the diet of grasshoppers

scientific article published on 6 October 2013

Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding

scientific article (publication date: 2007)

Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia

scientific article published in 2012

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

scientific article

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

scientific article published on 11 October 2006

Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change

article

Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae).

scientific article published on 18 September 2014

Shotgun assembly of the complete mitochondrial genome of the neotropical cracker butterfly Hamadryas epinome.

scientific article published on 16 October 2014

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

scientific article

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA.

scientific article

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects

scientific article

Towards next-generation biodiversity assessment using DNA metabarcoding

scientific article

Tracking earthworm communities from soil DNA.

scientific article published on 17 January 2012

Transcription profiling of resistance to Bti toxins in the mosquito Aedes aegypti using next-generation sequencing

scientific article published on 16 November 2011

Transcriptome response to pollutants and insecticides in the dengue vector Aedes aegypti using next-generation sequencing technology

scientific article

Two Methods to Easily Obtain Nucleotide Sequences from AFLP Loci of Interest

scientific article published on 01 January 2012

UniPathway: a resource for the exploration and annotation of metabolic pathways

scientific article published on 18 November 2011

Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces

scientific article published on 01 July 2009

Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes

scientific article published on 21 June 2016

Unsuspected prophage-like elements in Salmonella typhimurium

scientific article published in July 1997

Upscaling the niche variation hypothesis from the intra- to the inter-specific level

scientific article published on 22 July 2015

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

scientific article

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

scientific article

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

scientific article

obitools: a unix-inspired software package for DNA metabarcoding

scientific article published on 9 May 2015

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