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List of works by Shunmin He

6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda

scientific article published on 17 May 2019

Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division

scientific article published on 15 October 2020

BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications.

scientific article

Characterizing mobile element insertions in 5675 genomes

scientific article published on 01 March 2022

Clustered microRNAs' coordination in regulating protein-protein interaction network

scientific article published on 26 June 2009

Computational identification of piRNA targets on mouse mRNAs.

scientific article published on 16 December 2015

Contribution of Multiple Inter-Kingdom Horizontal Gene Transfers to Evolution and Adaptation of Amphibian-Killing Chytrid, Batrachochytrium dendrobatidis

scientific article

Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data.

scientific article

Horizontal functional gene transfer from bacteria to fishes

scientific article published on 22 December 2015

Integrated sequence-structure motifs suffice to identify microRNA precursors.

scientific article

LncVar: a database of genetic variation associated with long non-coding genes.

scientific article published on 6 September 2016

MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes

scientific article

MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control

scientific article published on 29 May 2008

MicroRNA-encoding long non-coding RNAs

scientific article

Multiple ancient horizontal gene transfers and duplications in lepidopteran species

scientific article

Multiple interkingdom horizontal gene transfers in Pyrenophora and closely related species and their contributions to phytopathogenic lifestyles.

scientific article

NPInter v4.0: an integrated database of ncRNA interactions

scientific article published on 01 January 2020

New insights into the fungal community from the raw genomic sequence data of fig wasp Ceratosolen solmsi.

scientific article

Noncoding <scp>RNA</scp> mutations in cancer

scientific article published in 2023

Predicting housekeeping genes based on Fourier analysis

scientific article

RIC-seq for global in situ profiling of RNA-RNA spatial interactions

scientific article published on 06 May 2020

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

Regulation of transcription factors on sexual dimorphism of fig wasps

scientific article published on 2 June 2015

SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling

scientific article published on 01 August 2021

SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci

scientific article

The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.

scientific article published on 27 January 2018

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression

scientific article

The human microbiome: a hot spot of microbial horizontal gene transfer.

scientific article

The influences of PRG-1 on the expression of small RNAs and mRNAs.

scientific article published on 30 April 2014

The properties and functions of virus encoded microRNA, siRNA, and other small noncoding RNAs

scientific article published on 01 January 2008

Towards a better detection of horizontally transferred genes by combining unusual properties effectively

scientific article published in 2012

Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells

scientific article

dbDEMC: a database of differentially expressed miRNAs in human cancers.

scientific article

piRBase: a comprehensive database of piRNA sequences

scientific article published on 01 January 2019

piRBase: a web resource assisting piRNA functional study.

scientific article

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