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List of works by Timothy J. Donohue

A Cardiolipin-Deficient Mutant of Rhodobacter sphaeroides Has an Altered Cell Shape and Is Impaired in Biofilm Formation.

scientific article

A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in Bacteria

scientific article

A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth

scientific article

A bacterial biosynthetic pathway for methylated furan fatty acids

scientific article published on 20 May 2020

A broad specificity β-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including γ-valerolactone

scientific article published in January 2023

A computational strategy to analyze label-free temporal bottom-up proteomics data

scientific article

A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers

scientific article published on October 2014

A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β(R)-aryl ether bond reveals the diversity of bacterial β-etherases

scientific article published on 12 December 2018

A majority of Rhodobacter sphaeroides promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation

scientific article published on 09 November 2020

A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis

scientific article

Activation of the cycA P2 promoter for the Rhodobacter sphaeroides cytochrome c2 gene by the photosynthesis response regulator

scientific article published on 01 November 1999

Activation of the global gene regulator PrrA (RegA) from Rhodobacter sphaeroides

scientific article published on June 2006

Activity of Rhodobacter sphaeroides RpoHII, a second member of the heat shock sigma factor family.

scientific article

An insect herbivore microbiome with high plant biomass-degrading capacity

scientific article

An integrated approach to reconstructing genome-scale transcriptional regulatory networks

scientific article published on 27 February 2015

Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris

scientific article published on 21 January 2020

Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures

scientific article published on August 2006

Aromatic Dimer Dehydrogenases from <i>Novosphingobium aromaticivorans</i> Reduce Monoaromatic Diketones

scientific article published on 06 October 2021

Bacterial responses to photo-oxidative stress

scientific article

Benzoyl Coenzyme A Pathway-Mediated Metabolism of meta -Hydroxy-Aromatic Acids in Rhodopseudomonas palustris ⬇️

scientific article published on July 12, 2013

Biosynthesis of the photosynthetic membranes of Rhodopseudomonas sphaeroides

scientific article published on 01 January 1983

COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database

scientific article published on 18 June 2020

CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria

scientific article published on 3 February 2015

Characterization of Rhodobacter sphaeroides cytochrome c(2) proteins with altered heme attachment sites

scientific article

Chemistry and combustion of fit-for-purpose biofuels.

scientific article published on 08 May 2013

Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides

scientific article

Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes

scientific article published on 7 July 2006

Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes.

scientific article

Convergence of the transcriptional responses to heat shock and singlet oxygen stresses

scientific article

Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization

scientific article

Development of a solar-powered microbial fuel cell

scientific article published on 9 October 2007

Development of the bacterial photosynthetic apparatus

scientific article

Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models

scientific article published on 29 September 2020

Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases

scientific journal article

Different Functions of Phylogenetically Distinct Bacterial Complex I Isozymes

scientific article published on February 2016

Discovery of the extracytoplasmic function σ factors

scientific article published on 17 June 2019

Electron Partitioning During Light- and Nutrient-Powered Hydrogen Production by Rhodobacter sphaeroides

article

Engineering <i>Novosphingobium aromaticivorans</i> to produce <i>cis,cis</i> -muconic acid from biomass aromatics

scientific article published on 24 January 2024

Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome

scientific article published on 12 October 2021

Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain

scientific article published on June 2012

Features of Rhodobacter sphaeroides CcmFH.

scientific article published on January 2003

Features of Rhodobacter sphaeroides ChrR required for stimuli to promote the dissociation of σ(E)/ChrR complexes

scientific article

Function of a glutathione-dependent formaldehyde dehydrogenase in Rhodobacter sphaeroides formaldehyde oxidation and assimilation

scientific journal article

Genetic and physical mapping of the Rhodobacter sphaeroides photosynthetic gene cluster from R-prime pWS2

scientific article published on 01 May 1991

Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444

scientific article published on 03 September 2020

Global analysis of photosynthesis transcriptional regulatory networks.

scientific article published on 11 December 2014

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides

scientific article

Hierarchical regulation of photosynthesis gene expression by the oxygen-responsive PrrBA and AppA-PpsR systems of Rhodobacter sphaeroides

scientific article published on 17 October 2008

Identification of genes required for recycling reducing power during photosynthetic growth.

scientific article

Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides

scientific article published on January 2008

Imaging of the Temporomandibular Joint in Juvenile Idiopathic Arthritis: How Does Quantitative Compare to Semiquantitative MRI Scoring?

scientific article published on 11 December 2018

In vitro enzymatic depolymerization of lignin with release of syringyl, guaiacyl, and tricin units

scientific article published on 27 November 2017

Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR.

scientific article published on August 2004

Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides

scientific article

Maximizing reductant flow into microbial H2 production.

scientific article published on 28 October 2011

Medium-Chain Fatty Acid Synthesis by "Candidatus Weimeria bifida" gen. nov., sp. nov., and "Candidatus Pseudoramibacter fermentans" sp. nov

scientific article published on 21 January 2020

Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids

publication published on 28 March 2022

Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate

scientific article published in 2022

Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate

scientific article published in 2022

Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery

scientific article published in 2022

Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

scientific article published on 20 November 2018

Microbes in the energy grid

scientific article (publication date: 23 May 2008)

Microorganisms and clean energy

scientific article (publication date: November 2006)

Molecular phylogeny of Archaea from soil.

scientific article published in January 1997

Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA.

scientific article published on December 2005

Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production.

scientific article

Novosphingobium aromaticivorans uses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin

scientific article published on 15 February 2018

Oxygen-dependent regulation of bacterial lipid production

scientific article

Pathways for transcriptional activation of a glutathione-dependent formaldehyde dehydrogenase gene

scientific article published in July 1998

Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

scientific article published on 19 August 2011

Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides

scientific article published on 01 March 1988

Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria

scientific article published on 14 April 2015

Policy proposal for publication of papers with data sets from genome-wide studies

scientific article

Positive and negative transcriptional regulators of glutathione-dependent formaldehyde metabolism

scientific article

Production of carotenoids from aromatics and pretreated lignocellulosic biomass by <i>Novosphingobium aromaticivorans</i>

scientific article published on 21 December 2023

Promoter Architecture Differences among <i>Alphaproteobacteria</i> and Other Bacterial Taxa

scientific article published on 13 July 2021

Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: identification of new proteins

scientific article

Pseudomonas aeruginosa RoxR, a response regulator related to Rhodobacter sphaeroides PrrA, activates expression of the cyanide-insensitive terminal oxidase

scientific journal article

Purification and characterization of an N-acylphosphatidylserine from Rhodopseudomonas sphaeroides

scientific article published on May 1982

Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors

scientific article published on 01 January 2003

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides

scientific article

Reactions of isocytochrome c2 in the photosynthetic electron transfer chain of Rhodobacter sphaeroides

scientific article published on 01 January 1997

Reconstruction of the core and extended regulons of global transcription factors

scientific article

Regulation of a cytochrome c2 isoform in wild-type and cytochrome c2 mutant strains of Rhodobacter sphaeroides ⬇️

scientific article published on 01 February 1992

Rewiring the specificity of extracytoplasmic function sigma factors

scientific article published on 14 December 2020

Roles for the Rhodobacter sphaeroides CcmA and CcmG proteins

scientific article

Shedding light on a Group IV (ECF11) alternative σ factor

scientific article published on 31 May 2019

Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks

scientific article

Specificity of the attenuation response of the threonine operon of Escherichia coli is determined by the threonine and isoleucine codons in the leader transcript

scientific article published in March 1987

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

scientific article published on 07 February 2014

Synthesis and scavenging role of furan fatty acids.

scientific article

Targeted sigma factor turnover inserts negative control into a positive feedback loop

scientific article published on 13 August 2009

The NtrYX Two-Component System Regulates the Bacterial Cell Envelope

scientific article published on 19 May 2020

The Rhodobacter sphaeroides ECF sigma factor, sigma(E), and the target promoters cycA P3 and rpoE P1

scientific article published on 01 November 1999

The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1.

scientific article published on January 2001

The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor

scientific article published in October 2001

The puf operon region of Rhodobacter sphaeroides

scientific article published on January 1988

The role of CenKR in the coordination of <i>Rhodobacter sphaeroides</i> cell elongation and division

scientific article published on 7 June 2023

Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges

scientific article

Transcriptional activation of the Rhodobacter sphaeroides cytochrome c(2) gene P2 promoter by the response regulator PrrA

scientific article

Use of an adenosine triphosphate analog, adenylyl imidodiphosphate, to evaluate adenosine triphosphate-dependent reactions in mitochondria

scientific article

delta-Aminolevulinate couples cycA transcription to changes in heme availability in Rhodobacter sphaeroides

scientific article

iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network

scientific article (publication date: 21 July 2011)

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