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List of works by Susannah G. Tringe

'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen.

scientific article

A call for standardized classification of metagenome projects

scientific article published on July 2010

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

A genomic perspective on stoichiometric regulation of soil carbon cycling

scientific article published on 21 July 2017

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae

scientific article published on 19 February 2013

A renaissance for the pioneering 16S rRNA gene

scientific article

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

scientific article

An insect herbivore microbiome with high plant biomass-degrading capacity

scientific article

Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

scientific article published on 29 November 2012

Aquifer environment selects for microbial species cohorts in sediment and groundwater

scientific article published on 3 February 2015

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

scientific article

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Author Correction: Plant-microbiome interactions: from community assembly to plant health

scientific article published on 23 November 2020

Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities

scientific article published in October 2009

Bioprospecting metagenomics for new glycoside hydrolases

scientific article published on January 2012

Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases

scientific article (publication date: 4 August 2011)

Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

scientific article

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

scientific article published on 05 August 2013

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

scientific article published on 22 January 2018

Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

scientific article published on 3 June 2013

Community-wide plasmid gene mobilization and selection

scientific article

Comparative Metagenomics of Freshwater Microbial Communities

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

scientific article

Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal

scientific article

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites

scientific article

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

scientific article published on 31 October 2015

Completion of an Experiment

scientific article published on 19 December 2018

Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

scientific article

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.

scientific article published on 8 December 2017

Convergent bacterial microbiotas in the fungal agricultural systems of insects

scientific article

Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms

scientific article

Correction: Bueno de Mesquita et al. Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel Halophilic Marivita Metagenome-Assembled Genomes from Unrestored Solar Salterns. Genes 2022, 13, 148

scientific article published in 2022

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

scientific article published on 23 May 2012

Defining the core Arabidopsis thaliana root microbiome

scientific article

Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

scientific article

Discovery of enzymes for toluene synthesis from anoxic microbial communities.

scientific article published on 19 March 2018

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

scientific article

Diverse uncultivated ultra-small bacterial cells in groundwater

scientific article

Diversity and heritability of the maize rhizosphere microbiome under field conditions

scientific article published on April 2013

Division of labor in honey bee gut microbiota for plant polysaccharide digestion

scientific article published on 27 November 2019

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community

scientific article

Elviz - exploration of metagenome assemblies with an interactive visualization tool.

scientific article published on 28 April 2015

Exploring the roles of microbes in facilitating plant adaptation to climate change

scientific article published in 2022

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

scientific article published on January 2013

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

scientific article

Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.

scientific article

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

scientific article published on 08 January 2016

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

scientific article published on 06 April 2017

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.

scientific article

Genomic features of bacterial adaptation to plants.

scientific article published on 18 December 2017

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

scientific article (publication date: March 2013)

Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk.

scientific article

Global distribution of a wild alga revealed by targeted metagenomics

scientific article

H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups.

scientific article

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013

High-resolution metagenomics targets specific functional types in complex microbial communities

scientific article published in September 2008

High-resolution phylogenetic microbial community profiling

scientific article published on 9 February 2016

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

scientific article

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.

scientific article published on 12 July 2016

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

scientific article

In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community.

scientific article published on 10 August 2016

Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance

scientific article published on 18 April 2019

Interactions between plants and soil shaping the root microbiome under abiotic stress

scientific article published on 01 October 2019

Landscape topography structures the soil microbiome in arctic polygonal tundra

scientific article published on 22 February 2018

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

scientific article published on 25 June 2018

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens

scientific article (publication date: June 2013)

Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils

scientific article published in 2023

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

scientific article

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

scientific article

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages

scientific article

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

scientific article

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

scientific article

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron

scientific article published on 25 February 2013

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

scientific article

Metagenomic analysis of a stable trichloroethene-degrading microbial community.

scientific article

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

scientific article

Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions.

scientific article published on 10 February 2017

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

scientific article

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

scientific article

Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle

scientific article

Metagenomics: DNA sequencing of environmental samples.

scientific article

Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis

scientific article

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

scientific article published on 23 January 2015

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

scientific article

Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms

scientific article published on 26 March 2012

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

scientific article

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.

scientific article

Niche differentiation is spatially and temporally regulated in the rhizosphere

scientific article published on 17 January 2020

PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

scientific article published on 16 July 2015

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions

scientific article published on 19 May 2015

Peatland Acidobacteria with a dissimilatory sulfur metabolism

scientific article published on 23 February 2018

Peatland Acidobacteria with a dissimilatory sulfur metabolism

article published in 2017

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry

scientific article published on 15 May 2013

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

scientific article published on 15 October 2015

Plant-microbiome interactions: from community assembly to plant health

scientific article published on 12 August 2020

Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities

scientific article

Primer and platform effects on 16S rRNA tag sequencing

scientific article published on 4 August 2015

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

scientific article

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass

scientific article (publication date: 2013)

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

scientific article published on 14 September 2020

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Rearrangement of a large novel Pseudomonas aeruginosa gene island in strains isolated from a patient developing ventilator-associated pneumonia

scientific article

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

scientific article published on 28 May 2018

Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters

scientific article

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

scientific article published on January 2013

Single-cell genomics for the masses.

scientific article published in July 2017

Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor

scientific article published on 19 April 2019

Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production ⬇️

scientific article published on July 31, 2010

Tackling soil diversity with the assembly of large, complex metagenomes

scientific article

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

scientific article

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

scientific article published on 12 February 2016

The Joint Genome Institute Offers Resources Beyond a Core Facility

The Tale of a Neglected Energy Source: Elevated Hydrogen Exposure Affects both Microbial Diversity and Function in Soil

scientific article

The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.

scientific article published on 6 May 2013

The airborne metagenome in an indoor urban environment

scientific article

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling

scientific article

The metagenome of an anaerobic microbial community decomposing poplar wood chips

scientific article

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium

scientific article

The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.

scientific article published on December 2011

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils

scientific article published on 20 July 2017

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

scientific article

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

scientific article published on 19 September 2010

mSphere of Influence: the View from the Microbiologists of the Future.

scientific article published on 19 June 2019

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