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List of works by Mark R. Viant

(1)H NMR metabolomics reveals contrasting response by male and female mussels exposed to reduced seawater pH, increased temperature, and a pathogen

scientific article published on 29 May 2014

A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics

scientific article published on February 2016

A long path length pulsed slit valve appropriate for high temperature operation: Infrared spectroscopy of jet‐cooled large water clusters and nucleotide bases

A new approach to toxicity testing in Daphnia magna: application of high throughput FT-ICR mass spectrometry metabolomics

article

A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data

scientific article

A stable-isotope mass spectrometry-based metabolic footprinting approach to analyze exudates from phytoplankton

scientific article published on 29 October 2013

AN AVIAN BIOASSAY FOR ENVIRONMENTAL ESTROGENS: THE GROWTH RESPONSE OF ZEBRA FINCH (TAENIOPYGIA GUTTATA) CHICK OVIDUCT TO ORAL ESTROGENS

Acoustic Mist Ionization Mass Spectrometry for Ultrahigh-Throughput Metabolomics Screening

scientific article published on 22 June 2021

Aggregation and dispersion of silver nanoparticles in exposure media for aquatic toxicity tests

scientific article published on 24 March 2011

An NMR metabolomic investigation of early metabolic disturbances following traumatic brain injury in a mammalian model

scientific article published in December 2005

An avian bioassay for environmental estrogens: the growth response of zebra finch (Taeniopygia guttata) chick oviduct to oral estrogens

scientific article published in December 2002

An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila

scientific article published on 24 November 2021

Anaerobic metabolism at thermal extremes: a metabolomic test of the oxygen limitation hypothesis in an aquatic insect.

scientific article published on 19 April 2013

Analysis of time course 1H NMR metabolomics data by multivariate curve resolution.

scientific article

Application of Passive Sampling to Characterise the Fish Exometabolome.

scientific article

Application of metabolomics to investigate the process of human orthotopic liver transplantation: a proof-of-principle study

scientific article published in April 2010

Applications of metabolomics to the environmental sciences

article

Approaches to interpretation of ‘Omics data: Identification of responses in European Flounder populations sampled from sites with different levels of environmental pollutants

article

Automated Sample Preparation and Data Collection Workflow for High-Throughput In Vitro Metabolomics

scientific article published in 2022

Automated assembly of species metabolomes through data submission into a public repository

scientific article published in August 2017

Automated screening for metabolites in complex mixtures using 2D COSY NMR spectroscopy

article published in 2006

Biomarkers of whale shark health: a metabolomic approach

scientific article

Birmingham Metabolite Library: a publicly accessible database of 1-D 1H and 2-D 1H J-resolved NMR spectra of authentic metabolite standards (BML-NMR)

article

CASMI-The Small Molecule Identification Process from a Birmingham Perspective

scientific article published on 21 May 2013

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scientific article

Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow

scientific article published in March 2013

Characterization of California rice field soils susceptible to delayed phytotoxicity syndrome

scientific article published in September 2004

Characterization of Isotopic Abundance Measurements in High Resolution FT-ICR and Orbitrap Mass Spectra for Improved Confidence of Metabolite Identification

scientific article published on 19 April 2011

Characterization of the metabolic actions of crude versus dispersed oil in salmon smolts via NMR-based metabolomics

scientific article

Combined bezafibrate and medroxyprogesterone acetate: potential novel therapy for acute myeloid leukaemia

scientific article

Comparative Sublethal Actions of 3-Trifluoromethyl-4-nitrophenol in Marine Molluscs as Measured by in Vivo31P NMR

article published in 2001

Comparison of histological, genetic, metabolomics, and lipid-based methods for sex determination in marine mussels

scientific article published on 12 June 2007

Comparison of modified Matyash method to conventional solvent systems for polar metabolite and lipid extractions

scholarly article by Jelena Sostare et al published 11 December 2018 in Analytica Chimica Acta

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

scientific article

Correction: Metabolomic Profiling of Drug Responses in Acute Myeloid Leukaemia Cell Lines

scientific article

Data standards can boost metabolomics research, and if there is a will, there is a way

scientific article

Databases and Standardisation of Reporting Methods for Metabolic Studies

Defining the Baseline and Oxidant Perturbed Lipidomic Profiles of Daphnia magna

scientific article published on 15 March 2017

Direct Sampling of Organisms from the Field and Knowledge of their Phenotype: Key Recommendations for Environmental Metabolomics

article

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

scientific article

Discovery of metabolic signatures for predicting whole organism toxicology

scientific article

Discriminating between different acute chemical toxicities via changes in the daphnid metabolome.

scientific article published on 18 August 2010

Discrimination models using variance-stabilizing transformation of metabolomic NMR data

scientific article

Disruption of DNA methylation via S-adenosylhomocysteine is a key process in high incidence liver carcinogenesis

scientific article published on 19 August 2013

Disruption of DNA methylation via S-adenosylhomocysteine is a key process in high incidence liver carcinogenesis in fish

scientific article published on 6 May 2013

Distinguishing between the metabolome and xenobiotic exposome in environmental field samples analysed by direct-infusion mass spectrometry based metabolomics and lipidomics.

scientific article published on 15 July 2014

Drug Redeployment to Kill Leukemia and Lymphoma Cells by Disrupting SCD1-Mediated Synthesis of Monounsaturated Fatty Acids

scientific article published on 5 May 2015

Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method

scientific article published on 19 May 2007

Effects of temperature on host-pathogen-drug interactions in red abalone, Haliotis rufescens, determined by 1H NMR metabolomics

scientific article

Effects of the application of different window functions and projection methods on processing of 1H J-resolved nuclear magnetic resonance spectra for metabolomics

scientific article published on 18 January 2008

Embedding standards in metabolomics: the Metabolomics Society data standards task group

Environmental metabolomics using 1H-NMR spectroscopy

scientific article published in January 2008

Environmental metabolomics: a critical review and future perspectives

article

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scholarly article published in Metabolomics

Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics

Exo-metabolome of Pseudovibrio sp. FO-BEG1 analyzed by ultra-high resolution mass spectrometry and the effect of phosphate limitation

scientific article (publication date: 2014)

Far infrared VRT spectroscopy of two water trimer isotopomers vibrationally averaged structures and rearrangement dynamics

article

Far-infrared VRT spectroscopy of the water dimer: Characterization of the 20 μm out-of-plane librational vibration

scientific article published in October 2015

Far-infrared laser vibration–rotation–tunneling spectroscopy of water clusters in the librational band region of liquid water

article

Fast targeted multidimensional NMR metabolomics of colorectal cancer

scientific article published on 01 December 2009

Fumarate is cardioprotective via activation of the Nrf2 antioxidant pathway.

scientific article published in March 2012

Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data

scientific article

HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries

scientific article

Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol.

scientific article

Hepatic transcriptomic and metabolomic responses in the stickleback (Gasterosteus aculeatus) exposed to environmentally relevant concentrations of dibenzanthracene.

scientific article

High-resolution mass spectrometry provides novel insights into products of human metabolism of organophosphate and brominated flame retardants

scientific article published on 21 January 2015

High-throughput tissue extraction protocol for NMR- and MS-based metabolomics

scientific article

How close are we to complete annotation of metabolomes?

scientific article published on 20 January 2017

Hydrogen bond breaking dynamics in the water pentamer: Terahertz VRT spectroscopy of a 20 μm libration

scientific article published in January 2017

Hydrogen bond breaking dynamics of the water trimer in the translational and librational band region of liquid water.

scientific article published in June 2001

Hypoxia triggers major metabolic changes in AML cells without altering indomethacin-induced TCA cycle deregulation.

scientific article published on 18 October 2010

Identifying health impacts of exposure to copper using transcriptomics and metabolomics in a fish model

scientific article published in January 2010

Improved Algal Toxicity Test System for Robust Omics-Driven Mode-of-Action Discovery in Chlamydomonas reinhardtii.

scientific article published on 10 May 2019

Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation

scientific article

Improved identification of metabolites in complex mixtures using HSQC NMR spectroscopy

scientific article

Improved methods for the acquisition and interpretation of NMR metabolomic data ⬇️

scientific article published on October 24, 2003

In Quest of new fingerprints of exposure to VOC from consumer products

Influence of organic carbon on reductive dechlorination of thiobencarb in California rice field soils

scientific article published in January 2005

Infrared laser spectroscopy of uracil in a pulsed slit jet

article

Integrating omic technologies into aquatic ecological risk assessment and environmental monitoring: hurdles, achievements, and future outlook

scientific article published on January 2010

International NMR-based environmental metabolomics intercomparison exercise.

scientific article

Investigation of terahertz vibration-rotation tunneling spectra for the water octamer

scientific article

Knowledge transfer initiative between molecular biologists and environmental researchers and regulators

scientific article published in July 2007

Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity

scientific article published on 01 March 2022

Line-shape analysis of J-resolved NMR spectra: application to metabolomics and quantification of intensity errors from signal processing and high signal congestion

scientific article published in December 2009

Linked metabolites: a tool for the construction of directed metabolic graphs

scientific article published on 6 February 2010

Liver tumors in wild flatfish: a histopathological, proteomic, and metabolomic study

scientific article published on January 2005

MI-Pack: Increased confidence of metabolite identification in mass spectra by integrating accurate masses and metabolic pathways

article

MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis.

scientific article published on 11 November 2014

MaConDa: a publicly accessible mass spectrometry contaminants database

scientific article published in 2012

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

scientific article (publication date: 26 May 2012)

Mass spectrometry based environmental metabolomics: a primer and review

article

Metabolic changes in Japanese medaka (Oryzias latipes) during embryogenesis and hypoxia as determined by in vivo 31P NMR.

scientific article

Metabolic changes in flatfish hepatic tumours revealed by NMR-based metabolomics and metabolic correlation networks

scientific article

Metabolic effects of dinoseb, diazinon and esfenvalerate in eyed eggs and alevins of Chinook salmon (Oncorhynchus tshawytscha) determined by 1H NMR metabolomics

scientific article

Metabolic responses produced by crude versus dispersed oil in Chinook salmon pre-smolts via NMR-based metabolomics

scientific article

Metabolomic method to detect a metabolite corona on amino-functionalized polystyrene nanoparticles

scientific article published on 16 May 2019

Metabolomic profiling of drug responses in acute myeloid leukaemia cell lines

scientific article

Metabolomics Discovers Early-Response Metabolic Biomarkers that Can Predict Chronic Reproductive Fitness in Individual

scholarly article by Nadine S Taylor published in July 2018

Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton.

scientific article

Metabolomics confirms that dissolved organic carbon mitigates copper toxicity

scientific article published on 14 August 2015

Metabolomics of microliter hemolymph samples enables an improved understanding of the combined metabolic and transcriptional responses of Daphnia magna to cadmium

scientific article

Metabolomics reveals an involvement of pantothenate for male production responding to the short-day stimulus in the water flea, Daphnia pulex ⬇️

scientific article published on 26 April 2016

Metabolomics reveals target and off-target toxicities of a model organophosphate pesticide to roach (Rutilus rutilus): implications for biomonitoring.

scientific article

Metabolomics standards initiative: ontology working group work in progress

Metabolomics: Methodologies and applications in the environmental sciences

article

Microbiome function predicts amphibian chytridiomycosis disease dynamics

scientific article published on 10 March 2022

Microwave electronic spectroscopy, electric field dissociation and photofragmentation of the H + 2 ion

Microwave spectroscopy and interaction potential of the long‐range He...Ar+ion

Miniaturising acute toxicity and feeding rate measurements in Daphnia magna

scientific article published on 8 February 2017

Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline

article by Olga Hrydziuszko & Mark R. Viant published 8 October 2011 in Metabolomics

Molecular responses of European flounder (Platichthys flesus) chronically exposed to contaminated estuarine sediments.

scientific article

Molecular toxicity of cerium oxide nanoparticles to the freshwater alga Chlamydomonas reinhardtii is associated with supra-environmental exposure concentrations.

scientific article

Multi-omics approaches confirm metal ions mediate the main toxicological pathways of metal-bearing nanoparticles in lung epithelial A549 cells

NMR-based metabolomic analysis of cerebrospinal fluid and serum in neurological diseases - a diagnostic tool?

article

NMR-based metabolomics: a powerful approach for characterizing the effects of environmental stressors on organism health.

scientific article

NMR-derived developmental metabolic trajectories: an approach for visualizing the toxic actions of trichloroethylene during embryogenesis

article

Near-dissociation microwave spectra of rare-gas diatomic ions

article

Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling

scientific article

Nuclear hyperfine structure in the electronic millimetre wave spectrum of H2+

Omega-3 and alpha-tocopherol provide more protection against contaminants in novel feeds for Atlantic salmon (Salmo salar L.) than omega-6 and gamma tocopherol

scientific article published on 14 January 2016

Optimisation of DNA extraction from the crustacean Daphnia ⬇️

scientific article

Optimized metabolite extraction from blood serum for 1H nuclear magnetic resonance spectroscopy

scientific article published on 05 February 2008

Optimized method for the determination of phosphoarginine in abalone tissue by high-performance liquid chromatography

scientific article published in December 2001

Oral estrogen masculinizes female zebra finch song system

scientific article published in March 2002

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

scholarly article by Kristian Peters et al published 7 December 2018 in GigaScience

Predicting chronic copper and nickel reproductive toxicity to Daphnia pulex-pulicaria from whole-animal metabolic profiles

scientific article published on 5 February 2016

Profiling MS proteomics data using smoothed non-linear energy operator and Bayesian additive regression trees

scientific article published in September 2009

Proposed minimum reporting standards for chemical analysis

scientific article (publication date: September 2007)

Proposed reporting requirements for the description of NMR-based metabolomics experiments

article

Protein Corona Modulates Uptake and Toxicity of Nanoceria via Clathrin-Mediated Endocytosis

scientific article published on August 2016

Proton NMR-based metabolite analyses of archived serial paired serum and urine samples from myeloma patients at different stages of disease activity identifies acetylcarnitine as a novel marker of active disease

scientific article

Pseudorotation in Water Trimer Isotopomers Using Terahertz Laser Spectroscopy

Quality assurance and quality control processes: summary of a metabolomics community questionnaire

Quantitative Lipoprotein Subclass and Low Molecular Weight Metabolite Analysis in Human Serum and Plasma by 1H NMR Spectroscopy in a Multilaboratory Trial

scientific article published on 27 September 2018

Quantitative characterization of the (D2O)3 torsional manifold by terahertz laser spectroscopy and theoretical analysis

Quantitative characterization of the water trimer torsional manifold by terahertz laser spectroscopy and theoretical analysis. II. (H2O)3

article

Recent developments in environmental metabolomics

scientific article published on 13 August 2008

Regional adaptation defines sensitivity to future ocean acidification

scientific article

Regulation of brain-derived neurotrophic factor messenger RNA levels in avian hypothalamic slice cultures

scientific article published on January 2000

Revealing the metabolome of animal tissues using 1H nuclear magnetic resonance spectroscopy

scientific article published in January 2007

Robust twin boosting for feature selection from high-dimensional omics data with label noise

article by Shan He et al published January 2015 in Information Sciences

Space and patchiness affects diversity-function relationships in fungal decay communities

scientific article published on 16 October 2020

Spectral relative standard deviation: a practical benchmark in metabolomics

scientific article

Spectroscopy of HD+ in high angular momentum states

article

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

article by Norman Morrison et al published 24 August 2007 in Metabolomics

Statistical Correlations between NMR Spectroscopy and Direct Infusion FT-ICR Mass Spectrometry Aid Annotation of Unknowns in Metabolomics

scientific article published on 29 January 2016

Structure and function of BamE within the outer membrane and the β-barrel assembly machine

scientific article

Sublethal actions of copper in abalone (Haliotis rufescens) as characterized by in vivo 31P NMR.

scientific article

Systems Biology Approach Reveals a Calcium-Dependent Mechanism for Basal Toxicity in Daphnia magna.

scientific article published on 5 August 2015

Terahertz Laser Vibration−Rotation Tunneling Spectroscopy of the Water Tetramer

article

Terahertz laser vibration–rotation–tunneling spectrum of the water pentamer–d10

article

The Role of Omics in the Application of Adverse Outcome Pathways for Chemical Risk Assessment

scientific article

The Time Is Right to Focus on Model Organism Metabolomes

scientific article published on 15 February 2016

The critical importance of defined media conditions in Daphnia magna nanotoxicity studies

scientific article published on 8 September 2013

The effect of perhexiline on myocardial protection during coronary artery surgery: a two-centre, randomized, double-blind, placebo-controlled trial. ⬇️

scientific article

The future of metabolomics in ELIXIR

scientific article published in 2017

The future of metabolomics in ELIXIR.

scientific article

The impact of inflammation on metabolomic profiles in patients with arthritis

scientific article published on August 2013

The metabolic response of marine copepods to environmental warming and ocean acidification in the absence of food. ⬇️

scientific article

The role of reporting standards for metabolite annotation and identification in metabolomic studies

scientific article published on 16 October 2013

The year in review: highlights of the Metabolomics Society in 2013

article

The year in review: highlights of the Metabolomics Society in 2014

Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach

scientific article

Toxic actions of dinoseb in medaka (Oryzias latipes) embryos as determined by in vivo 31P NMR, HPLC-UV and 1H NMR metabolomics

scientific article

Toxicokinetics and biotransformation of p-nitrophenol in red abalone (Haliotis rufescens).

scientific article published in February 2003

Toxicological effect of single contaminants and contaminant mixtures associated with plant ingredients in novel salmon feeds

scientific article published on 2 September 2014

Toxicological effect of single contaminants and contaminant mixtures associated with plant ingredients in novel salmon feeds

scientific article published in September 2014

Training needs in metabolomics

scientific article published on 29 May 2015

Transcriptomic and metabolomic approaches to investigate the molecular responses of human cell lines exposed to the flame retardant hexabromocyclododecane (HBCD).

scientific article published on 27 August 2015

Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox

scientific article published on January 2010

Use cases, best practice and reporting standards for metabolomics in regulatory toxicology

scientific article published on 10 July 2019

Use of 5-azacytidine in a proof-of-concept study to evaluate the impact of pre-natal and post-natal exposures, as well as within generation persistent DNA methylation changes in Daphnia.

scientific article

Using community metabolomics as a new approach to discriminate marine microbial particulate organic matter in the western English Channel

article

Utilizing in vivo nuclear magnetic resonance spectroscopy to study sublethal stress in aquatic organisms

scientific article

Validation of a urine metabolome fingerprint in dog for phenotypic classification

Validation of a urine metabolome fingerprint in dog for phenotypic classification

Water pentamer: characterization of the torsional-puckering manifold by terahertz VRT spectroscopy

scientific article published in July 2005

Wolbachia modulates lipid metabolism in Aedes albopictus mosquito cells

scientific article

msPurity: Automated Evaluation of Precursor Ion Purity for Mass Spectrometry-Based Fragmentation in Metabolomics

scientific article

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data

scientific article

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data

scientific article published on 16 October 2017

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