Search filters

List of works by Andrew E. Firth

A +1 ribosomal frameshifting motif prevalent among plant amalgaviruses

scientific article published on 02 September 2016

A Review of Flaviviruses that Have No Known Arthropod Vector

scientific article

A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis

scientific article published on 7 March 2018

A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product

scientific article published on 08 September 2009

A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting

scientific article

A hidden gene in astroviruses encodes a cell-permeabilizing protein involved in virus release

scientific article published on 07 June 2019

A hidden gene in astroviruses encodes a viroporin

scientific article published on 13 August 2020

A late-stage assembly checkpoint of the human mitochondrial ribosome large subunit

scientific article published on 17 February 2022

A novel role for poly(C) binding proteins in programmed ribosomal frameshifting

scientific article published on 02 June 2016

A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing

scientific article published on 12 January 2016

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment

scientific article

ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?

scientific article published on 16 October 2017

Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site

scientific article published on 13 January 2012

An analysis by metabolic labelling of the encephalomyocarditis virus ribosomal frameshifting efficiency and stimulators.

scientific article published on 8 August 2017

An essential RNA element resides in a central region of hepatitis E virus ORF2.

scientific article published on 20 March 2013

An essential fifth coding ORF in the sobemoviruses

scientific article published on 2 July 2013

An overlapping essential gene in the Potyviridae

scholarly article

An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells ⬇️

scientific article

Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli

scientific article

Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses

scientific article published on 17 March 2009

Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

scientific article published in 2023

Avoidance of reporter assay distortions from fused dual reporters

scientific article published on 25 April 2017

Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene

scientific article published on 6 June 2008

Bioinformatic analysis suggests that the Cypovirus 1 major core protein cistron harbours an overlapping gene

scientific article published on 20 May 2008

Bioinformatic analysis suggests that the Orbivirus VP6 cistron encodes an overlapping gene

scientific article published in 2008

Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses

scientific article

C6orf203 is an RNA-binding protein involved in mitochondrial protein synthesis

scientific article published on 01 September 2019

Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanning

scientific article

Characterization of Ribosomal Frameshifting in Theiler's Murine Encephalomyelitis Virus.

scientific article published on 10 June 2015

Characterization of the stimulators of protein-directed ribosomal frameshifting in Theiler's murine encephalomyelitis virus

scientific article published on 01 September 2019

Comparative Analysis of Gene Expression in Virulent and Attenuated Strains of Infectious Bronchitis Virus at Subcodon Resolution

scientific article published on 28 August 2019

Comparative analysis of gene expression in virulent and attenuated strains of infectious bronchitis virus at sub-codon resolution

scientific article published on 19 April 2019

Complete genome sequences of two insect-specific flaviviruses.

scientific article published on 16 September 2017

Conservation of a packaging signal and the viral genome RNA packaging mechanism in alphavirus evolution

scientific article

CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms

scientific article published on 28 February 2020

Detecting overlapping coding sequences in virus genomes

scientific article

Detecting overlapping coding sequences with pairwise alignments.

scientific article published on 3 September 2004

Detection of a fourth orbivirus non-structural protein

scientific article (publication date: 2011)

Detection of novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico using metagenomics and characterization of their in vitro host ranges

scientific article published on 9 November 2018

Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement

scientific article published on 6 May 2015

Discovery of a novel Tymoviridae-like virus in mosquitoes from Mexico

scientific article published on 13 November 2018

Discovery of a small arterivirus gene that overlaps the GP5 coding sequence and is important for virus production

scientific article

Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma

scientific article

Discovery of three RNA viruses using ant transcriptomic datasets

scientific article published on 10 November 2018

Ecuador Paraiso Escondido Virus, a New Flavivirus Isolated from New World Sand Flies in Ecuador, Is the First Representative of a Novel Clade in the Genus Flavivirus

scientific article

Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.

scientific article

Efficient -2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein

scientific article

Enterovirus Competition Assay to Assess Replication Fitness.

scientific article published on 20 May 2019

Estimating photometric redshifts with artificial neural networks

article

Evidence for a novel coding sequence overlapping the 5'-terminal approximately 90 codons of the gill-associated and yellow head okavirus envelope glycoprotein gene

scientific article

Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses

scientific article

Frameshifting in alphaviruses: a diversity of 3' stimulatory structures

scientific article

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

scientific article published on 28 April 2008

HBVRegDB: annotation, comparison, detection and visualization of regulatory elements in hepatitis B virus sequences

scientific article

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.

scientific article

ICTV Virus Taxonomy Profile: Dicistroviridae

scientific article

ICTV Virus Taxonomy Profile: Iflaviridae.

scientific article

ICTV Virus Taxonomy Profile: Polycipiviridae

scientific article published on 05 March 2019

ICTV Virus Taxonomy Profile: Solinviviridae

scientific article published on 05 March 2019

Identification of a novel splice variant form of the influenza A virus M2 ion channel with an antigenically distinct ectodomain

scientific article (publication date: 2012)

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences

scientific article

Insect-specific flaviviruses: a systematic review of their discovery, host range, mode of transmission, superinfection exclusion potential and genomic organization

scientific article

Isolation and characterization of Nylanderia fulva virus 1, a positive-sense, single-stranded RNA virus infecting the tawny crazy ant, Nylanderia fulva

scientific article published on 30 June 2016

Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses

scientific article published on 17 October 2014

Maturation of selected human mitochondrial tRNAs requires deadenylation.

scientific article

Merida virus, a putative novel rhabdovirus discovered in Culex and Ochlerotatus spp. mosquitoes in the Yucatan Peninsula of Mexico

scientific article published on 11 February 2016

Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins

scientific article published on 16 May 2016

NS1' of Flaviviruses in the Japanese Encephalitis Virus Serogroup Is a Product of Ribosomal Frameshifting and Plays a Role in Viral Neuroinvasiveness

scientific article

Neurodevelopmental protein Musashi 1 interacts with the Zika genome and promotes viral replication ⬇️

scientific article

New insights into flavivirus evolution, taxonomy and biogeographic history, extended by analysis of canonical and alternative coding sequences

scientific article

Non-canonical translation in RNA viruses

scientific article published on 25 April 2012

Nonstructural proteins nsp2TF and nsp2N of porcine reproductive and respiratory syndrome virus (PRRSV) play important roles in suppressing host innate immune responses.

scientific article published on 8 January 2018

Novel flaviviruses from mosquitoes: mosquito-specific evolutionary lineages within the phylogenetic group of mosquito-borne flaviviruses

scientific article

Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts

scientific article (publication date: 2013)

Observation of dually decoded regions of the human genome using ribosome profiling data

scientific article

Optical and Near-Infrared Observations of the Peculiar Type ia Supernova 1999ac

scientific article published in Astronomical Journal

Orsay virus utilizes ribosomal frameshifting to express a novel protein that is incorporated into virions

scientific article published on 06 January 2014

Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes

scientific article published in PLoS ONE

Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses.

scientific article published on 31 August 2017

Programmed -2/-1 Ribosomal Frameshifting in Simarteriviruses: an Evolutionarily Conserved Mechanism

scientific article published on 30 July 2019

Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC).

scientific article

Propensity of a picornavirus polymerase to slip on potyvirus-derived transcriptional slippage sites

scientific article published on 03 December 2018

Protein-directed ribosomal frameshifting temporally regulates gene expression

scientific article published on 8 June 2017

Recode-2: new design, new search tools, and many more genes

scientific article

Recurrent Emergence of Catalytically Inactive Ornithine Decarboxylase Homologous Forms That Likely Have Regulatory Function

article

Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome

scientific article published on 20 March 2019

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

scientific article (publication date: 6 September 2016)

Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome ⬇️

scientific article published on October 24, 2011

Ribosome profiling of the retrovirus murine leukemia virus

scientific article published on 22 January 2018

Solenopsis invicta virus 3: mapping of structural proteins, ribosomal frameshifting, and similarities to Acyrthosiphon pisum virus and Kelp fly virus

scientific article

Solenopsis invicta virus 3: pathogenesis and stage specificity in red imported fire ants

scientific article published on 29 May 2014

Somatic Mutation Screening Using Archival Formalin-Fixed, Paraffin-Embedded Tissues by Fluidigm Multiplex PCR and Illumina Sequencing

scientific article published on 09 July 2015

Statistics of protein library construction

scientific article published on 2 June 2005

Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element

scientific article

Strategies and computational tools for improving randomized protein libraries

scientific article published in October 2005

Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

scientific article published on 09 December 2021

The transcriptional and translational landscape of equine torovirus

scientific article published on 08 April 2018

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

scientific article

Transactivation of programmed ribosomal frameshifting by a viral protein

scientific article

Transcriptional and Translational Landscape of Equine Torovirus

scientific article published on 16 August 2018

Transcriptional slippage in the positive-sense RNA virus family Potyviridae

scientific article

Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity

scientific article

Translational autoregulation of BZW1 and BZW2 expression by modulating the stringency of start codon selection.

scientific article published on 22 February 2018

User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries

scientific article

Paulina is supported by:

About Paulina

Help