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List of works by Jerome Bouquet

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

scientific article

Biological activities of nitidine, a potential anti-malarial lead compound

scientific article published on 9 March 2012

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

scientific article

Close similarity between sequences of hepatitis E virus recovered from humans and swine, France, 2008-2009.

scientific article published in November 2011

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

scientific article published on 11 January 2016

Experimental Zika Virus Infection in a New World Monkey Model Reproduces Key Features of the Human Disease

scientific article

Genetic characterization and codon usage bias of full-length Hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution

scientific article published on 21 August 2012

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

scientific article published on 24 May 2018

Identical consensus sequence and conserved genomic polymorphism of hepatitis E virus during controlled interspecies transmission

scientific article

Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease

scientific article published on 12 February 2016

Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen.

scientific article published on 25 September 2017

New models of hepatitis E virus replication in human and porcine hepatocyte cell lines

scientific article published on 21 November 2012

Quantitative proteomics identifies host factors modulated during acute hepatitis E virus infection in the swine model

scientific article

RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease

scientific article

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.

scientific article

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease.

scientific article

Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing

scientific article published on 21 March 2019