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List of works by Argyris Papantonis

A modified chromatin-immunoprecipitation protocol for silkmoth ovarian follicular cells reveals C/EBP and GATA binding modes on an early chorion gene promoter

scientific article

A novel role for the Bombyx Slbo homologue, BmC/EBP, in insect choriogenesis.

scientific article published on 26 September 2005

A wave of nascent transcription on activated human genes

scholarly article

ARID1A facilitates KRAS signaling-regulated enhancer activity in an AP1-dependent manner in colorectal cancer cells

scientific article published on 19 June 2019

Active RNA polymerases: mobile or immobile molecular machines?

scientific article published on 13 July 2010

Architectural factor HMGA induces promoter bending and recruits C/EBP and GATA during silkmoth chorion gene regulation

scientific article

Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response

scientific article published on 15 September 2016

BmCbZ, an insect-specific factor featuring a composite DNA-binding domain, interacts with BmC/EBPgamma.

scientific article published on 10 November 2005

CHD1 assumes a central role during follicle development

scientific article published on 16 September 2008

Chorion gene activation and repression is dependent on BmC/EBP expression and binding to cognate cis-elements

scientific article

Chorion genes: a landscape of their evolution, structure, and regulation

scientific article

Cutting a Long Intron Short: Recursive Splicing and Its Implications

scientific article published on 29 November 2016

DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift

scientific article published on 19 May 2021

Detecting Circular RNAs by RNA Fluorescence In Situ Hybridization

scientific article published in January 2018

Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories

scientific article

Distinct IL-1α-responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner

scientific article published on 07 November 2019

Dynamic reconfiguration of long human genes during one transcription cycle

scientific article published on 14 May 2012

Enhancers and silencers: an integrated and simple model for their function

scientific article published on 9 January 2012

Exon Skipping Is Correlated with Exon Circularization

scientific article published on 26 February 2015

Exploiting native forces to capture chromosome conformation in mammalian cell nuclei

scientific article (publication date: 9 December 2016)

Fixing the model for transcription: the DNA moves, not the polymerase

scientific article published on January 2011

Forces driving the three-dimensional folding of eukaryotic genomes

GARLIC: a bioinformatic toolkit for aetiologically connecting diseases and cell type-specific regulatory maps

scientific article published on 22 December 2016

Genome architecture and the role of transcription

scientific article published on 29 March 2010

HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types

scientific article published on 20 April 2018

Isolation of the protein and RNA content of active sites of transcription from mammalian cells ⬇️

scientific article published on 25 February 2016

Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart

scientific article published on 18 March 2019

Modeling bidirectional transcription using silkmoth chorion gene promoters

scientific article

Modes of phase separation affecting chromatin regulation

scientific article published on 16 October 2019

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.

scientific article

Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology

scientific article published on 21 May 2021

Promoter type influences transcriptional topography by targeting genes to distinct nucleoplasmic sites

scientific article published on 26 February 2013

RNA polymerase II is required for spatial chromatin reorganization following exit from mitosis

scientific article published on 22 October 2021

Recent Zika Virus Isolates Induce Premature Differentiation of Neural Progenitors in Human Brain Organoids

scientific article

Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells

scientific article published on 26 October 2016

Shaping Epigenetic Memory via Genomic Bookmarking

Shaping epigenetic memory via genomic bookmarking

scientific article published on 28 November 2017

Silkmoth chorion gene regulation revisited: promoter architecture as a key player

scientific article published on 07 December 2009

Space exploration by the promoter of a long human gene during one transcription cycle

scientific article published on 8 January 2013

Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations

scientific article published on 12 June 2019

Splicing of many human genes involves sites embedded within introns

scientific article published on 20 April 2015

TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning

scientific article

TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed

scientific article

Technologies to study spatial genome organization: beyond 3C

scientific article published on 01 November 2019

The 4-D landscape of the inflammatory response

scientific article

The proteomes of transcription factories containing RNA polymerases I, II or III.

scientific article

Transcription as a force partitioning the eukaryotic genome

scientific article

Transcription factories: genome organization and gene regulation

scientific article published on 18 April 2013

iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers

scientific article published on 05 July 2019

yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs

scientific article published on 13 December 2018

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