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List of works by Mark Holodniy

1292Incidence of norovirus-associated acute gastroenteritis in four Veteran's Affairs Medical Center populations in the United States, 2011-2012.

scientific article published in December 2014

1499. Gonorrhea and Chlamydia Infections in the Department of Veterans Affairs (VA), 2013–2017

1640. Pertussis Testing in the Department of Veterans Affairs, 2010–2018

1648. Incidence of Norovirus and Rotavirus From Multisite Active Surveillance in Veteran’s Affairs Hospitals, December 2016–February 2018: Results From the SUPERNOVA Network

1690Opportunities for Improved Detection and Treatment of Latent Tuberculosis Infection Among Veterans — Western United States, January 2010–July 2013.

scientific article published in December 2014

1882. Tuberculosis in the Department of Veterans Affairs: Missed Opportunities for Prevention

2322. Etiology, Severity of Illness, and Risk Factors for Patients Hospitalized with Acute Gastroenteritis from Multi-Site Veteran’s Affairs (VA) Surveillance, 2016–2018: Results from SUPERNOVA

scientific article published on 23 October 2019

2504. Influenza Surveillance and Outbreaks in the US Department of Veterans Affairs (VA): 2017–2018 Season

355Carbapenem-Resistant Enterobacteriaceae (CRE) Distribution within the Veterans Affairs Healthcare System: 2013.

scientific article published in December 2014

449. Post-Hurricane Maria Surveillance for Infectious Diseases in the Veterans Affairs San Juan Medical Center, Puerto Rico

A double blind, randomized, placebo-controlled phase II study to assess the safety and efficacy of orally administered SP-303 for the symptomatic treatment of diarrhea in patients with AIDS

article

A double blind, randomized, placebo-controlled phase II study to assess the safety and efficacy of orally administered SP-303 for the symptomatic treatment of diarrhea in patients with AIDS.

scientific article published on November 1999

A joint frailty model provides for risk stratification of HIV-infected patients based on unobserved heterogeneity

scientific article published on 9 February 2018

A meta-analytic evaluation of the polymerase chain reaction for the diagnosis of HIV infection in infants

scientific article published in May 1996

A review of drug-drug interactions in older HIV-infected patients

scientific article published on 19 September 2017

A systematic review of cost-utility analyses in HIV/AIDS: implications for public policy

scientific article

A vaccine to prevent herpes zoster and postherpetic neuralgia in older adults

scientific article

Accuracy of the TRUGENE HIV-1 genotyping kit.

scientific article

Accuracy, precision, and consistency of expert HIV type 1 genotype interpretation: an international comparison (The GUESS Study).

scientific article published on 24 May 2005

Acute Hepatitis A Infection and Vaccination in the Veterans Health Administration

Acute Hepatitis A Infections among Veterans in Outbreak States, 2016-2018

Acute and chronic immune biomarker changes during interferon/ribavirin treatment in HIV/HCV co-infected patients

scientific article

Acute cardiac injury events ≤30 days after laboratory-confirmed influenza virus infection among U.S. veterans, 2010-2012.

scientific article published on 30 September 2015

Adherence to protease inhibitors, HIV-1 viral load, and development of drug resistance in an indigent population.

scientific article published on March 2000

An open-label randomized clinical trial of novel therapeutic strategies for HIV-infected patients in whom antiretroviral therapy has failed: rationale and design of the OPTIMA Trial.

scientific article

Antibiotic-associated pseudomembranous enteritis due to Clostridium difficile

scientific article published in June 1994

Application of a non-amplification-based technology to detect invasive fungal pathogens

scientific article

Are current screening protocols for chronic hepatitis B virus infection adequate?

scientific article published on 17 December 2015

Bridging Generations: Understanding Pathogenesis Leads to New Infectious Diseases Therapies and Diagnostics—Introduction and Dedication

scientific article published in 2006

CD4 counts and mortality in virologically suppressed US veterans

scientific article published on 30 December 2013

COVID-19 Infections Among Healthcare Personnel in the United States Veterans Health Administration, March - August, 2020

scientific article published on 11 December 2020

COVID-19-associated hospitalization rates and severe outcomes among Veterans from 5 Veteran Affairs Medical Centers, February 27-July 17, 2020: Hospital-Based Surveillance

scientific article published on 14 December 2020

Carbon Monoxide Poisoning in the Veterans Health Administration, 2010 - 2016.

scientific article published in May 2017

Carbon monoxide poisoning surveillance in the Veterans Health Administration, 2010-2017

article

Case files from Stanford University Medical Center: the initial presentation of HIV-1 infection--where public and personal health meet.

scientific article published on 26 January 2006

Cerebral sparganosis: case report and review

scientific article

Challenges in Surveillance for Chikungunya Virus (CHIKV)Infection.

scientific article published on 26 February 2015

Characteristics of Veterans Accessing the Veterans Affairs Telephone Triage Who Have Depression or Suicidal Ideation: Opportunities for Intervention

scientific article published on 4 April 2013

Chikungunya Fever Cases Identified in the Veterans Health Administration System, 2014

scientific article

Clinical Application of Reverse Transcription-Polymerase Chain Reaction for HIV Infection ⬇️

scientific article published on June 1, 1994

Clinical utility of viral load measurements in individuals with chronic hepatitis C infection on antiviral therapy

scientific article published in September 2005

Clinically significant drug interactions in younger and older human immunodeficiency virus-positive patients receiving antiretroviral therapy

scientific article published on May 2011

Combining surveillance systems: effective merging of U.S. Veteran and military health data.

scientific article

Comparative Effectiveness of High-Dose vs. Standard-Dose Influenza Vaccines among Veterans: 2015–2016 and 2016–2017 Seasons.

scientific article published on 4 October 2017

Comparative assessment of antimicrobial usage measures in the Department of Veterans Affairs

scientific article published on April 2012

Comparative effectiveness of dried plasma HIV-1 viral load testing in Brazil using ViveST for sample collection

article

Comparative stabilities of quantitative human immunodeficiency virus RNA in plasma from samples collected in VACUTAINER CPT, VACUTAINER PPT, and standard VACUTAINER tubes ⬇️

scientific article published on June 1, 1995

Concurrent outbreaks with co-infection of norovirus and Clostridium difficile in a long-term-care facility

scientific article published on 22 February 2013

Connection domain mutations in treatment-experienced patients in the OPTIMA trial

scientific article published in June 2010

Correlation of morphologic diagnosis of Pneumocystis carinii with the presence of pneumocystis DNA amplified by the polymerase chain reaction

scientific article published on March 1, 1992

Cost effectiveness of screening strategies for early identification of HIV and HCV infection in injection drug users

scientific article

Cost-Effectiveness of HIV Preexposure Prophylaxis for People Who Inject Drugs in the United States

scientific article

Cost-Effectiveness of Treatments for Genotype 1 Hepatitis C Virus Infection in non-VA and VA Populations.

scientific article

Cost-effectiveness analysis of risk-factor guided and birth-cohort screening for chronic hepatitis C infection in the United States

scientific article

Cost-effectiveness of HIV screening in patients older than 55 years of age.

scientific article

Cost-effectiveness of newer antiretroviral drugs in treatment-experienced patients with multidrug-resistant HIV disease

scientific article published on December 2013

Cost-effectiveness of screening for HIV in the era of highly active antiretroviral therapy

scientific article published in February 2005

Coverage and Timeliness of Combined Military and Veteran Surveillance Systems

scientific article

Covid-19 Testing, Hospital Admission, and Intensive Care Among 2,026,227 United States Veterans Aged 54-75 Years

scientific article published on 14 April 2020

Covid-19 by Race and Ethnicity: A National Cohort Study of 6 Million United States Veterans

scientific article published on 18 May 2020

Darunavir in the treatment of HIV-1 infection: a viewpoint by Mark Holodniy

scientific article published in January 2007

Decrease in HIV provirus in peripheral blood mononuclear cells during zidovudine and human rIL-2 administration

scientific article published on 01 January 1992

Decreased human immunodeficiency virus type 1 plasma viremia during antiretroviral therapy reflects downregulation of viral replication in lymphoid tissue

scientific article

Decreased medical expenditures for care of HIV-seropositive patients. The impact of highly active antiretroviral therapy at a US Veterans Affairs Medical Center

scientific article published on September 1999

Deficiency in antibody response to human cytomegalovirus glycoprotein gH in human immunodeficiency virus-infected patients at risk for cytomegalovirus retinitis

scientific article

Dengue surveillance in Veterans Affairs healthcare facilities, 2007-2010

scientific article

Dengue, Chikungunya & Zika Virus in VA Caribbean HCS, Nov. 2015-Aug. 2016

scientific article (publication date: 2 May 2017)

Detection and quantification of gene amplification products by a nonisotopic automated system

scientific article published on 01 January 1992

Detection of Human Immunodeficiency Virus DNA and RNA in Semen by the Polymerase Chain Reaction ⬇️

scientific article published on October 1, 1991

Detection of human immunodeficiency virus type 1 in semen: effects of disease stage and nucleoside therapy

scientific article

Determinants of the cost of health services used by veterans with HIV.

scientific article published in September 2011

Development of elvitegravir resistance and linkage of integrase inhibitor mutations with protease and reverse transcriptase resistance mutations

scientific article

Diagnosing invasive fungal disease in critically ill patients

scientific article published on 13 July 2011

Does Antimicrobial Prescription Data Improve Influenza Surveillance in VA?

scientific article

Dried-Plasma Transport Using a Novel Matrix and Collection System for Human Immunodeficiency Virus and Hepatitis C Virus Virologic Testing

scientific article published in May 2009

Effect of Home Testing of International Normalized Ratio on Clinical Events ⬇️

scientific article published on October 21, 2010

Effect of Interferon-Free Regimens on Disparities in Hepatitis C Treatment of US Veterans

scientific article published on 07 March 2018

Effect of management strategies and clinical status on costs of care for advanced HIV.

scientific article published on May 2014

Effect of treatment interruption and intensification of antiretroviral therapy on health-related quality of life in patients with advanced HIV: a randomized, controlled trial.

scientific article

Effective detection of the 2009 H1N1 influenza pandemic in U.S. Veterans Affairs medical centers using a national electronic biosurveillance system

scientific article

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection

scientific article

Enhanced Influenza Surveillance Using Telephone Triage and Electronic Syndromic Surveillance in the Department of Veterans Affairs, 2011-2015.

scientific article published on July 2017

Enhanced Influenza Surveillance using Telephone Triage Data in the VA ESSENCE Biosurveillance System

scientific article

Enhanced health event detection and influenza surveillance using a joint Veterans Affairs and Department of Defense biosurveillance application

scientific article

Epidemiologic Review of Carbapenem-Resistant Enterobacteriaceae and Duodenoscopes in the Department of Veterans Affairs

scientific article

Epidemiologic Review of Carbapenem-Resistant Enterobacteriaceae, Duodenoscopes, and Endoscopic Ultrasonography in the Department of Veterans Affairs

scientific article published on 8 March 2016

Epidemiologic Review of Veterans Health Administration Patients with Isolation of Nontuberculous Mycobacteria after Cardiopulmonary Bypass Procedures

scientific article

Epidemiology and burden of influenza in the U.S. Department of Veterans Affairs

scientific article published on 16 October 2017

Evaluation of Praedico™, A Next Generation Big DataBiosurveillance Application.

scientific article published on 26 February 2015

Evolution of genotypic resistance algorithms and their impact on the interpretation of clinical trials: an OPTIMA trial substudy

scientific article published in September 2007

Factors for Hospitalizations and Neurologic Complications in Zika Virus Infection in the Department of Veterans Affairs (VA).

scientific article published on 4 October 2017

Firearm Injury Encounters in the Veterans Health Administration (VHA), 2010-2015.

scientific article published in May 2017

Frequency of HIV screening in the Veterans Health Administration: implications for early diagnosis of HIV infection

scientific article published in June 2008

Fulminant Kaposi's sarcoma complicating long-term corticosteroid therapy.

scientific article

GBV-C viremia and clinical events in advanced HIV infection

scientific article published on 19 November 2013

Genetic Variation in the IL-6 and HLA-DQB1 Genes Is Associated with Spontaneous Clearance of Hepatitis C Virus Infection

scientific article published on 02 June 2016

HIV infection in the elderly.

scientific article

HIV quantitation in spiked vaginocervical secretions: lack of non-specific inhibitory factors. DATRI 005 Study Team. Division of AIDS Treatment Research Initiative

scientific article published in June 1998

HIV testing of at risk patients in a large integrated health care system

scientific article published on March 2007

HIV viral load markers in clinical practice

scientific article published on June 1996

HIV-1 Protease, Reverse Transcriptase, and Integrase Variation

scientific article

HIV-1 RNA and viral load

scientific article

HIV-1 load quantitation: a 17-year perspective

scientific article published on September 2006

HIV–HBV vaccine escape mutant infection with loss of HBV surface antibody and persistent HBV viremia on tenofovir/emtricitabine without antiviral resistance

article

Health-related quality of life assessment after antiretroviral therapy: a review of the literature

scientific article published on May 2013

Health-related quality of life in a randomized trial of antiretroviral therapy for advanced HIV disease.

scientific article published in January 2009

Healthcare-associated Legionnaires' disease: Limitations of surveillance definitions and importance of epidemiologic investigation

scientific article published on 30 July 2017

Hepatitis C virus protease gene diversity in patients coinfected with human immunodeficiency virus

scientific article

High levels of adherence do not prevent accumulation of HIV drug resistance mutations

scientific article published on September 2003

Human Immunodeficiency Virus Type 1 Populations in Blood and Semen ⬇️

scientific article published on January 1, 1998

Human pegivirus RNA is found in multiple blood mononuclear cells in vivo and serum-derived viral RNA-containing particles are infectious in vitro

scientific article

IL28B polymorphism is not associated with HCV protease diversity in patients co-infected with HIV and HCV treated with pegylated interferon and ribavirin

scientific article published on October 2012

Identical Strain of Mycobacterium conceptionense Isolated from Patients at 2 Veterans Affairs Medical Centers within the Same Metropolitan Area over a 4 Year Period

scientific article published on 4 October 2017

Immune biomarker differences and changes comparing HCV mono-infected, HIV/HCV co-infected, and HCV spontaneously cleared patients

scientific article

Impact of highly active antiretroviral therapy and immunologic status on hepatitis C virus quasispecies diversity in human immunodeficiency virus/hepatitis C virus-coinfected patients

scientific article

Impact of highly active antiretroviral therapy on hepatitis C virus protease quasispecies diversity in HIV co-infected patients

scientific article published in May 2010

Impact of interferon-ribavirin treatment on hepatitis C virus (HCV) protease quasispecies diversity in HIV- and HCV-coinfected patients

scientific article

Incidence of Medically-Attended Norovirus-Associated Acute Gastroenteritis in Four Veteran's Affairs Medical Center Populations in the United States, 2011-2012.

scientific article published on 21 May 2015

Incidence, etiology, and severity of acute gastroenteritis among prospectively enrolled patients in 4 Veterans Affairs hospitals and outpatient centers, 2016-18

scientific article published on 25 June 2020

Infectious complications in OIF/OEF veterans with traumatic brain injury

scientific article published on January 2009

Influenza Surveillance in the Department of Veterans Affairs (VA): 2012-2013 Influenza Season.

scientific article published on 29 April 2014

Influenza treatment and prophylaxis with neuraminidase inhibitors: a review

scientific article

Inhibition of HIV infectivity by a natural human isolate of Lactobacillus jensenii engineered to express functional two-domain CD4

scientific article

Integrating tobacco cessation into mental health care for posttraumatic stress disorder: a randomized controlled trial

scientific article

Interferon combination therapy for HIV/hepatitis C virus coinfection

scientific article published on September 2011

Is spinal tuberculosis contagious?

scientific article published on 23 February 2010

Localized Cluster Detection Applied to Joint and Separate Military and Veteran Subpopulations

scientific article

Mapping MOS-HIV to HUI3 and EQ-5D-3L in Patients With HIV

article

Maternal-fetal pharmacokinetics and dynamics of a single intrapartum dose of maraviroc in rhesus macaques

scientific article

Meeting Mandatory Infectious Disease Reporting Requirements: The Department of Veterans Affairs’ Plan.

scientific article published on 29 April 2014

MicroRNA and hepatitis C virus--challenges in investigation and translation: a review of the literature

scientific article

Multicenter evaluation of the performance characteristics of the bayer VERSANT HCV RNA 3.0 assay (bDNA)

scientific article

Multifunctional coatings to simultaneously promote osseointegration and prevent infection of orthopaedic implants

scientific article published on 18 January 2016

New protease inhibitors for the treatment of chronic hepatitis C: a cost-effectiveness analysis

scientific article published on February 2012

Novel targets for antiretroviral therapy: clinical progress to date

scientific article published on January 2009

One-year outcomes of community-acquired and healthcare-associated pneumonia in the Veterans Affairs Healthcare System

scientific article

Oseltamivir for treatment and prophylaxis of influenza infection

Outcomes associated with a cognitive-behavioral chronic pain management program implemented in three public HIV primary care clinics

scientific article published in April 2012

Patterns of COVID-19 testing and mortality by race and ethnicity among United States veterans: A nationwide cohort study

scientific article published on 22 September 2020

Peripheral Blood Mononuclear Cell Gene Expression Remains Broadly Altered Years after Successful Interferon-Based Hepatitis C Virus Treatment

scientific article

Pertussis Surveillance in Veterans Affairs Medical Centers in WesternUnited States – 2010-2014.

scientific article published on 26 February 2015

Pharmacokinetics and tolerability of oseltamivir combined with probenecid.

scientific article

Phylogeny of Zika Virus in Western Hemisphere, 2015

scientific article

Plasma viremia in human immunodeficiency virus infection: relationship to stage of disease and antiviral treatment

scientific article published on January 1, 1992

Predictive value of HIV-1 replication capacity and phenotypic susceptibility scores in antiretroviral treatment-experienced patients

scientific article published on 26 January 2012

Prevalence of HIV infection among inpatients and outpatients in Department of Veterans Affairs health care systems: implications for screening programs for HIV

article

Prevalence of antiretroviral drug resistance in the HIV-1-infected urban indigent population in San Francisco: a representative study

scientific article published on August 2004

Prevention of shingles by varicella zoster virus vaccination

scientific article published on August 2006

Proteomic analysis of serum cytokine levels in response to highly active antiretroviral therapy (HAART).

scientific article published in March 2005

Public health practice is not research

article

Public health surveillance in the U.S. Department of Veterans Affairs: evaluation of the Praedico surveillance system

scientific article published on 10 February 2022

Quality of life of patients with advanced HIV/AIDS: measuring the impact of both AIDS-defining events and non-AIDS serious adverse events

scientific article published on August 2009

Quantitation of hepatitis C virus RNA in peripheral blood mononuclear cells in HCV-monoinfection and HIV/HCV-coinfection

scientific article published in March 2012

Quantitative virological measures of antiretroviral therapy

scientific article published on January 1, 1992

Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning

scientific article published on 30 October 2019

Recent advances in hepatitis C virus treatment: review of HCV protease inhibitor clinical trials

scientific article published on September 2010

Reduction in plasma human immunodeficiency virus ribonucleic acid after dideoxynucleoside therapy as determined by the polymerase chain reaction ⬇️

scientific article published on November 1, 1991

Relationship between antiretroviral prescribing patterns and treatment guidelines in treatment-naive HIV-1-infected US veterans (1992-2004).

scientific article published in January 2007

Reply to Young et al.

scientific article published on 29 June 2015

Representational fluency in HIV clinical practice: a model of instructor discourse

scientific article

Results from a large-scale epidemiologic look-back investigation of improperly reprocessed endoscopy equipment

scientific article published on 7 May 2012

Results of antiretroviral treatment interruption and intensification in advanced multi-drug resistant HIV infection from the OPTIMA trial

scientific article

Reuse of insulin pens among multiple patients at 2 Veterans Affairs medical centers

scientific article published on 22 July 2015

Risk for In-Hospital Complications Associated with COVID-19 and Influenza - Veterans Health Administration, United States, October 1, 2018-May 31, 2020

scientific article published on 23 October 2020

Risk of cardiovascular disease from antiretroviral therapy for HIV: a systematic review

scientific article

Risk of cardiovascular events associated with current exposure to HIV antiretroviral therapies in a US veteran population

scientific article published on 22 April 2015

Role of environmental surveillance in determining the risk of hospital-acquired legionellosis: a national surveillance study with clinical correlations

scientific article

Safety of Zoster Vaccine in Elderly Adults Following Documented Herpes Zoster ⬇️

scientific article published on April 30, 2013

Safety, Tolerability, Pharmacokinetics, and Efficacy of an Interleukin-2 Agonist Among HIV-Infected Patients Receiving Highly Active Antiretroviral Therapy

article

Severe pneumonia due to adenovirus serotype 14: a new respiratory threat?

scientific article published in February 2008

Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays ⬇️

scientific article published on May 1, 1998

Sofosbuvir-based treatment regimens for chronic, genotype 1 hepatitis C virus infection in U.S. incarcerated populations: a cost-effectiveness analysis

scientific article

Structured interruptions of highly active antiretroviral therapy in cycles of 4 weeks off/12 weeks on therapy in children having a chronically undetectable viral load cause progressively smaller viral rebounds

scientific article published on 20 May 2009

Successful management of disseminated Nocardia transvalensis infection in a heart transplant recipient after development of sulfonamide resistance: case report and review

scientific article

Sudden sensorineural hearing loss associated with vardenafil

scientific article published in January 2010

Surveillance for Opioid Overdose in the Veterans HealthAdministration, 2004-2014.

scientific article published on 26 February 2015

The Impact of Active Herpes Simplex Virus Infection on Human Immunodeficiency Virus Load ⬇️

scientific article published on September 1, 1997

The OPTIMA Cohort

The Relationship Between HIV Infection and Cardiovascular Disease

scientific article published on August 2008

The VACS index accurately predicts mortality and treatment response among multi-drug resistant HIV infected patients participating in the options in management with antiretrovirals (OPTIMA) study

scientific article

The concurrent validity and responsiveness of the health utilities index (HUI 3) among patients with advanced HIV/AIDS

article

The effect of diagnosis with HIV infection on health-related quality of Life

scientific article published in February 2006

The sulfone syndrome in a patient receiving dapsone prophylaxis for Pneumocystis carinii pneumonia ⬇️

scientific article published on March 1, 1992

Thrombocytopenia from combination treatment with oseltamivir and probenecid: case report, MedWatch data summary, and review of the literature.

scientific article

Trends in Incidence of Norovirus-associated Acute Gastroenteritis in Four Veterans Affairs Medical Center Populations in the United States, 2011-2015

scientific article published on 01 January 2020

Ultrasensitive detection of rare mutations using next-generation targeted resequencing

scientific article published on 19 October 2011

Use of Dried Blood Spot Samples in HCV-, HBV-, and Influenza-Related Epidemiological Studies

scholarly article published 13 June 2014

Use of dried clinical samples for storing and detecting influenza RNA.

scientific article published on 18 April 2011

Utilization and access to antiretroviral genotypic resistance testing and results within the US Department of Veterans Affairs

scientific article published in January 2006

Validation of Acute Gastroenteritis-related International Classification of Diseases, Clinical Modification Codes in Pediatric and Adult US Populations

scientific article published on 18 October 2019

Zika virus infection in the Veterans Health Administration (VHA), 2015-2016.

scientific article published on 24 May 2018

siRNA Delivery into Human T Cells and Primary Cells with Carbon-Nanotube Transporters

article

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