List of works - Peter T. Hraber

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets

scientific article

A single, continuous metric to define tiered serum neutralization potency against HIV.

scientific article published on 19 January 2018

Advantage of rare HLA supertype in HIV disease progression

scientific article

Amphiphilic block copolymer delivery of a DNA vaccine against Zika virus

scholarly article by Peter T. Hraber et al published November 2018 in Vaccine

Amplification patterns of three genomic regions predict distant recurrence in breast carcinoma

scientific article published in July 2007

Autologous neutralizing antibodies to the transmitted/founder viruses emerge late after simian immunodeficiency virus SIVmac251 infection of rhesus monkeys

scientific article (publication date: June 2010)

Clade C HIV-1 Envelope Vaccination Regimens Differ in Their Ability To Elicit Antibodies with Moderate Neutralization Breadth against Genetically Diverse Tier 2 HIV-1 Envelope Variants

scientific article published on 21 March 2019

Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index

scientific article (publication date: September 2008)

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

scientific article

Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes

scientific article (publication date: 14 December 2006)

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

article

Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies

scientific article

Correction for Hraber et al., "Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments".

scientific article

Correction: Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

scientific article published on 25 September 2017

Corrigendum: Zika viral dynamics and shedding in rhesus and cynomolgus macaques

scientific article published on February 2017

Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape

scientific article

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing

scientific article

Envelope vaccination shapes viral envelope evolution following simian immunodeficiency virus infection in rhesus monkeys

scientific article

Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection

scientific article

Estimating the contributions of selection and self-organization in RNA secondary structure.

scientific article published on July 1999

Evidence for human leukocyte antigen heterozygote advantage against hepatitis C virus infection

scientific article

Extensive HLA class I allele promiscuity among viral CTL epitopes

scientific article published on September 2007

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

scientific article

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

scientific article published on June 2009

Genital tract sequestration of SIV following acute infection

scientific article

Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies

scientific article

HIV-1 Envelope Glycoproteins from Diverse Clades Differentiate Antibody Responses and Durability among Vaccinees

scientific article published on 31 January 2018

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

article

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

scientific article published on 01 August 2019

HIV-1 subtype C superinfected individuals mount low autologous neutralizing antibody responses prior to intrasubtype superinfection

scientific article

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

scientific article

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

scientific article

Intrasubtype C superinfected individuals mount delayed and low-titer autologous neutralizing antibody responses prior to superinfection

article

Language games: Advanced R & R packages

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

scientific article

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

scientific article published on 04 May 2009

Many Routes to an Antibody Heavy-Chain CDR3: Necessary, Yet Insufficient, for Specific Binding.

scientific article published on 8 March 2018

Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody

scientific article

Neutralizing IgG at the portal of infection mediates protection against vaginal simian/human immunodeficiency virus challenge

scientific article published on 21 August 2013

Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses.

scientific article

P09-21 LB. Deep sequencing of HIV-1 from acute infection: low initial diversity, and rapid but variable CTL escape

article

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments

scientific article

Polyvalent vaccine approaches to combat HIV-1 diversity

scientific article published on January 2017

Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection

scientific article

Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth

scientific article published on 19 November 2020

Recombinant renewable polyclonal antibodies

scientific article published on January 2015

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

scientific article

Resources to Discover and Use Short Linear Motifs in Viral Proteins

scientific article published on 16 August 2019

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

scientific article published on 7 November 2011

Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.

scientific article published on March 2017

Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses

scientific article

Structural Transition and Antibody Binding of EBOV GP and ZIKV E Proteins from Pre-Fusion to Fusion-Initiation State

scientific article

T-cell vaccination reduces simian immunodeficiency virus levels in semen

scientific article published on 29 July 2009

TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy.

scientific article

The TRIM5 gene modulates penile mucosal acquisition of simian immunodeficiency virus in rhesus monkeys

scientific article

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

scientific article published on June 2009

The hepatitis C sequence database in Los Alamos

scientific article

Timing and source of subtype-C HIV-1 superinfection in the newly infected partner of Zambian couples with disparate viruses

scientific article

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

scientific article

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

scientific article

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

scientific article

Zika viral dynamics and shedding in rhesus and cynomolgus macaques

scientific article (publication date: December 2016)

List of works by Peter T. Hraber

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets

A single, continuous metric to define tiered serum neutralization potency against HIV.

Advantage of rare HLA supertype in HIV disease progression

Amphiphilic block copolymer delivery of a DNA vaccine against Zika virus

Amplification patterns of three genomic regions predict distant recurrence in breast carcinoma

Autologous neutralizing antibodies to the transmitted/founder viruses emerge late after simian immunodeficiency virus SIVmac251 infection of rhesus monkeys

Clade C HIV-1 Envelope Vaccination Regimens Differ in Their Ability To Elicit Antibodies with Moderate Neutralization Breadth against Genetically Diverse Tier 2 HIV-1 Envelope Variants

Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies

Correction for Hraber et al., "Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments".

Correction: Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

Corrigendum: Zika viral dynamics and shedding in rhesus and cynomolgus macaques

Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing

Envelope vaccination shapes viral envelope evolution following simian immunodeficiency virus infection in rhesus monkeys

Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection

Estimating the contributions of selection and self-organization in RNA secondary structure.

Evidence for human leukocyte antigen heterozygote advantage against hepatitis C virus infection

Extensive HLA class I allele promiscuity among viral CTL epitopes

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

Genital tract sequestration of SIV following acute infection

Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies

HIV-1 Envelope Glycoproteins from Diverse Clades Differentiate Antibody Responses and Durability among Vaccinees

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

HIV-1 subtype C superinfected individuals mount low autologous neutralizing antibody responses prior to intrasubtype superinfection

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

Intrasubtype C superinfected individuals mount delayed and low-titer autologous neutralizing antibody responses prior to superinfection

Language games: Advanced R & R packages

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

Many Routes to an Antibody Heavy-Chain CDR3: Necessary, Yet Insufficient, for Specific Binding.

Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody

Neutralizing IgG at the portal of infection mediates protection against vaginal simian/human immunodeficiency virus challenge

Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses.

P09-21 LB. Deep sequencing of HIV-1 from acute infection: low initial diversity, and rapid but variable CTL escape

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments

Polyvalent vaccine approaches to combat HIV-1 diversity

Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection

Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth

Recombinant renewable polyclonal antibodies

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

Resources to Discover and Use Short Linear Motifs in Viral Proteins

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.

Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses

Structural Transition and Antibody Binding of EBOV GP and ZIKV E Proteins from Pre-Fusion to Fusion-Initiation State

T-cell vaccination reduces simian immunodeficiency virus levels in semen

TLR7 agonists induce transient viremia and reduce the viral reservoir in SIV-infected rhesus macaques on antiretroviral therapy.

The TRIM5 gene modulates penile mucosal acquisition of simian immunodeficiency virus in rhesus monkeys

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

The hepatitis C sequence database in Los Alamos

Timing and source of subtype-C HIV-1 superinfection in the newly infected partner of Zambian couples with disparate viruses

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

Zika viral dynamics and shedding in rhesus and cynomolgus macaques