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List of works by Benjamin Pinsky

A comparison of CMV detection in gastrointestinal mucosal biopsies using immunohistochemistry and PCR performed on formalin-fixed, paraffin-embedded tissue

scientific article published in July 2013

A synonymous change in the influenza A virus neuraminidase gene interferes with PCR-based subtyping and oseltamivir resistance mutation detection

scientific article published on 22 June 2011

An international collaboration to harmonize the quantitative plasma Epstein-Barr virus DNA assay for future biomarker-guided trials in nasopharyngeal carcinoma

scientific article published on 4 March 2013

An international multicenter performance analysis of cytomegalovirus load tests

scientific article published on 24 October 2012

Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus

scientific article published on 12 November 2015

Antibody-Dependent Enhancement of Severe Disease Is Mediated by Serum Viral Load in Pediatric Dengue Virus Infections

scientific article published on 01 April 2020

BK polyomavirus subtype III in a pediatric renal transplant patient with nephropathy

scientific article published on 18 September 2013

Bartholin's abscess caused by hypermucoviscous Klebsiella pneumoniae

scientific article

CMV antigenemia and quantitative viral load assessments in hematopoietic stem cell transplant recipients

scientific article published on 10 November 2012

Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus

scientific article published on 4 January 2017

Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua

scientific article published on June 2017

Clinical characteristics and outcomes of pediatric patients with CMV DNA detection in bronchoalveolar lavage fluid

scientific article

Clinical evaluation of a single-reaction real-time RT-PCR for pan-dengue and chikungunya virus detection

scientific article published on 27 February 2016

Clinical significance of low cytomegalovirus DNA levels in human plasma

scientific article

Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman

scientific article published in December 2017

Commutability of the Epstein-Barr virus WHO international standard across two quantitative PCR methods

scientific article

Comparison of Xpert Flu rapid nucleic acid testing with rapid antigen testing for the diagnosis of influenza A and B.

scientific article

Comparison of an Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing

article

Comparison of automated nucleic acid extraction methods for the detection of cytomegalovirus DNA in fluids and tissues

scientific article published on 8 April 2014

Comparison of real-time PCR and conventional biochemical methods for identification of Staphylococcus lugdunensis

scientific article published on 9 September 2009

Comparison of the Accula SARS-CoV-2 Test with a Laboratory-Developed Assay for Detection of SARS-CoV-2 RNA in Clinical Nasopharyngeal Specimens

scientific article published on 14 May 2020

Comparison of the FDA-approved CDC DENV-1-4 real-time reverse transcription-PCR with a laboratory-developed assay for dengue virus detection and serotyping

scientific article published on 31 July 2013

Correction: Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus

scientific article published on 21 December 2015

Cost-Effective Respiratory Virus Testing

scientific article published on 26 August 2019

Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer.

scientific article published on April 2017

Current and future molecular diagnostics for ocular infectious diseases

scientific article published on 31 August 2016

Cytomegalovirus load at treatment initiation is predictive of time to resolution of viremia and duration of therapy in hematopoietic cell transplant recipients

scientific article published on 10 June 2015

Cytomegalovirus-Responsive CD8+ T Cells Expand After Solid Organ Transplantation in the Absence of CMV Disease.

scientific article published on 15 February 2017

Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome

scientific article published on 01 December 2020

Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel

scientific article published on 7 December 2016

Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing

scientific article

Detection of cytomegalovirus drug resistance mutations by next-generation sequencing

scientific article

Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya

scientific article

Development of an internally controlled real-time reverse transcriptase PCR assay for pan-dengue virus detection and comparison of four molecular dengue virus detection assays

scientific article published on May 2013

Diagnosis of Zika virus infection on a nanotechnology platform

scientific article published on 6 March 2017

Diagnosis of congenital CMV using PCR performed on formalin-fixed, paraffin-embedded placental tissue

scientific article published on September 2013

Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections

scientific article published on 12 January 2019

Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2

scientific article published on 04 November 2020

Encephalitis Caused by Chikungunya Virus in a Traveler from the Kingdom of Tonga

scientific article

Evaluation of serial urine viral cultures for the diagnosis of cytomegalovirus infection in neonates and infants

scientific article published on 11 March 2014

Evaluation of the Aptima HCV Quant Dx Assay Using Serum and Dried Blood Spots

scientific article published on 28 March 2019

Evaluation of the Aptima HIV-1 Quant Dx Assay Using Plasma and Dried Blood Spots

scientific article published on 17 August 2016

Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient

scientific article published on 20 May 2015

Glc7/protein phosphatase 1 regulatory subunits can oppose the Ipl1/aurora protein kinase by redistributing Glc7.

scientific article

Hair sheep blood, citrated or defibrinated, fulfills all requirements of blood agar for diagnostic microbiology laboratory tests

scientific article

High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality

scientific article

High incidence of Zika virus infection detected in plasma and cervical cytology specimens from pregnant women in Guayaquil, Ecuador

scientific article (publication date: February 2017)

High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs

scientific article published on 29 July 2020

Homotypic Dengue Virus Reinfections in Nicaraguan Children

scientific article published on 16 March 2016

How great is the threat of chikungunya virus?

scientific article

Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2

scientific article published on 09 July 2020

Human papilloma virus is not prevalent in nevus sebaceus

scientific article published on 14 November 2013

IgG antibodies to dengue enhanced for FcγRIIIA binding determine disease severity

scientific article

Improved detection of emerging drug-resistant mutant cytomegalovirus subpopulations by deep sequencing

scientific article published on 2 June 2014

Improved serotype-specific dengue virus detection in Trinidad and Tobago using a multiplex, real-time RT-PCR.

scientific article

Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection

scientific article

Investigation of Preanalytical Variables Impacting Pathogen Cell-Free DNA in Blood and Urine

scientific article published on 23 October 2019

Laboratory-developed L1 sequencing and type-specific, real-time polymerase chain reaction for the detection and typing of human papillomaviruses in formalin-fixed, paraffin-embedded tissues

scientific article published on January 2013

Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing

scientific article published on 22 July 2015

Long-term shedding of influenza A virus in stool of immunocompromised child

scientific article published on July 2010

Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children

scientific article

Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses

scientific article published on 22 November 2019

Molecular Detection of Leptospira in Two Returned Travelers: Higher Bacterial Load in Cerebrospinal Fluid Versus Serum or Plasma

scientific article published on June 2015

Molecular Testing for Plasmodium falciparum by Use of Serum or Plasma and Comparison with Microscopy and Rapid Diagnostic Testing in Febrile Nigerian Patients

scientific article

Molecular and Culture-Based Bronchoalveolar Lavage Fluid Testing for the Diagnosis of Cytomegalovirus Pneumonitis

scientific article published on January 2016

Molecular diagnostics for human leptospirosis

scientific article

Multiplex Nucleic Acid Amplification Test for Diagnosis of Dengue Fever, Malaria, and Leptospirosis

scientific article

Multiplex real-time PCR assay for rapid identification of Mycobacterium tuberculosis complex members to the species level

scientific article published on 28 May 2008

Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology

scientific article published on 18 September 2015

Nlk is a murine protein kinase related to Erk/MAP kinases and localized in the nucleus ⬇️

scientific article published on February 3, 1998

Norovirus

scientific article

Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients

scientific article published on 08 May 2020

Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality

scientific article published on 5 April 2017

Persistence of Human Immunodeficiency Virus-1 Drug Resistance Mutations in Proviral Deoxyribonucleic Acid After Virologic Failure of Efavirenz-Containing Antiretroviral Regimens

scientific article published on 16 January 2019

Preferential lower respiratory tract infection in swine-origin 2009 A(H1N1) influenza

scientific article published in February 2010

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

scientific article published on 04 November 2020

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

scientific article published on 19 April 2021

Profound plasmacytosis in a patient with dengue

scientific article published on 11 October 2013

Progress in Quantitative Viral Load Testing: Variability and Impact of the WHO Quantitative International Standards

scientific article published on 16 November 2016

Proinflammatory IgG Fc structures in patients with severe COVID-19

scientific article published on 09 November 2020

Protein phosphatase 1 regulates exit from the spindle checkpoint in budding yeast

scientific article published on 09 July 2009

Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility

scientific article published on 23 March 2016

Quantitation of human papillomavirus DNA in plasma of oropharyngeal carcinoma patients

scientific article published on 8 October 2011

Real-time PCR testing for mecA reduces vancomycin usage and length of hospitalization for patients infected with methicillin-sensitive staphylococci

scientific article

Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS-CoV-2/COVID-19

scientific article published on 26 March 2020

Retrospective Pooled Screening for SARS-CoV-2 RNA in late 2019

scientific article published on 18 May 2020

Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing

scientific article published on 15 July 2015

SARS-CoV-2 RNAemia in a Healthy Blood Donor 40 Days After Respiratory Illness Resolution

scientific article published on 17 July 2020

Sensitive real-time PCR detection of pathogenic Leptospira spp. and a comparison of nucleic acid amplification methods for the diagnosis of leptospirosis

scientific article

Severe hepatitis associated with an echovirus 18 infection in an immune-compromised adult

scientific article published on 21 November 2012

Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses

scientific article

Single-reaction, multiplex, real-time rt-PCR for the detection, quantitation, and serotyping of dengue viruses

scientific article

Stability of Zika Virus in Urine: Specimen Processing Considerations and Implications for the Detection of RNA Targets in Urine

scientific article

The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman

scientific article published in December 2017

The Human Virome - Implications for Clinical Practice in Transplantation Medicine.

scientific article

The Ipl1-Aurora protein kinase activates the spindle checkpoint by creating unattached kinetochores

scientific article

The spindle checkpoint: tension versus attachment.

scientific article

Top-SUMO wrestles centromeric cohesion

scientific article

Ultrasensitive detection of drug-resistant pandemic 2009 (H1N1) influenza A virus by rare-variant-sensitive high-resolution melting-curve analysis

scientific article

Viremia and Clinical Presentation in Nicaraguan Patients Infected with Zika Virus, Chikungunya Virus, and Dengue Virus

scientific article

Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue

article published in the Proceedings of the National Academy of Sciences of the United States of America

Whole-Genome Analysis of Cervical Human Papillomavirus Type 35 from rural Zimbabwean Women

scientific article published on 24 April 2020

Yellow Fever Virus: Diagnostics for a Persistent Arboviral Threat

scientific article published on 25 September 2018

Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador

scientific article published on 11 July 2016

Zika Virus, Chikungunya Virus, and Dengue Virus in Cerebrospinal Fluid from Adults with Neurological Manifestations, Guayaquil, Ecuador

scientific article (publication date: 24 January 2017)

Zika Virus: Diagnostics for an Emerging Pandemic Threat

scientific article

p16 is superior to ProEx C in identifying high-grade squamous intraepithelial lesions (HSIL) of the anal canal

scientific article published on May 2013

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