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List of works by Derek Gatherer

A captured viral interleukin 10 gene with cellular exon structure

scientific article published on October 2008

A decade of sustained selection pressure on two surface sites of the VP1 protein of Enterovirus A71 suggests that immune evasion may be an indirect driver for virulence

scientific article published on 01 April 2019

A stroll across the epigenetic landscape: bringing Waddington's ideas into molecular biology

scientific article published on December 1, 1996

Adaptation of standard spreadsheet software for the analysis of DNA sequences

scientific article published on 01 January 1998

An N-terminal extension to the hepatitis B virus core protein forms a poorly ordered trimeric spike in assembled virus-like particles

scientific article published on 31 December 2014

An Unusual Codon Usage Pattern in the Ciliate Family Ophryoscolecidae and its Implications for Determining the Source of Cloned DNA

Analysis of Sequence Periodicity in E. coli Proteins: Empirical Investigation of the ?Duplication and Divergence? Theory of Protein Evolution ⬇️

scientific article published on August 1, 2003

Anguillid herpesvirus 1 transcriptome

scientific article

Assignment of the gene for dyskeratosis congenita to Xq28

article

Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae

publication published on 06 September 2021

Codon indices as a predictor of gene functionality in a Frankia operon

article

Codon indices as a predictor of gene functionality in a Frankia operon

scientific article published in 1999

Comparative genomics of carp herpesviruses

scientific article

Conserved Fever Pathways across Vertebrates: A Herpesvirus Expressed Decoy TNF-α Receptor Delays Behavioral Fever in Fish

scientific article published on February 2017

Conserved glycine 33 residue in flexible domain I of hepatitis C virus core protein is critical for virus infectivity

scientific article

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages.

scientific article published on 10 April 2018

Correlation of examination performance with lecture attendance: a comparative study of first-year biological sciences undergraduates

article by Derek Gatherer et al published April 1998 in Biochemical education

Cultural Evolution The Biological Perspective

Deep sequencing analysis of defective genomes of parainfluenza virus 5 and their role in interferon induction

scientific article published on 28 February 2013

Delineating the Plausible Molecular Vaccine Candidates and Drug Targets of Multidrug-Resistant Acinetobacter baumannii

scientific article published on 20 June 2019

Developmental effects of over-expression of normal and mutated forms of a Xenopus NF-kappa B homologue

scientific article

Ebola returns to its Congo Basin heartland

scholarly article by Derek Gatherer published in July 2018

Epstein-Barr virus isolates retain their capacity to evade T cell immunity through BNLF2a despite extensive sequence variation

scientific article published on 19 October 2011

Evolution and diversity in human herpes simplex virus genomes

scientific article

Expression of TGF-beta isoforms during first trimester human embryogenesis

scientific article published in October 1990

Finite Universe of Discourse: The Systems Biology of Walter Elsasser (1904-1991)

Functional characterization of residues required for the herpes simplex virus 1 E3 ubiquitin ligase ICP0 to interact with the cellular E2 ubiquitin-conjugating enzyme UBE2D1 (UbcH5a)

scientific article published on 21 March 2012

Gene Knockouts and Murine Development. (gene knockout/gene targeting/Mus/mammalian embryology/genetic redundancy)

Genetic content of wild-type human cytomegalovirus

scientific article published in May 2004

Genome Sequence of Human Papillomavirus 23 Strain HPV-23/Lancaster/2015.

scientific article

Genome Sequence of Human Papillomavirus Type 20, Strain HPV-20/Lancaster/2015.

scientific article

Genome Sequence of Human Rhinovirus A22, Strain Lancaster/2015.

scientific article published on 23 March 2017

Genotypic analysis of two hypervariable human cytomegalovirus genes

scientific article published on September 2008

High-resolution human cytomegalovirus transcriptome

scientific article published on 22 November 2011

High-throughput sequence analysis of variants of human cytomegalovirus strains Towne and AD169.

scientific article

IL-10 encoded by viruses: a remarkable example of independent acquisition of a cellular gene by viruses and its subsequent evolution in the viral genome.

scientific article

Identification of important amino acid replacements in the 2013-2016 Ebola virus outbreak

In silico design of Mycobacterium tuberculosis epitope ensemble vaccines.

scientific article

In silico design of knowledge-based Plasmodium falciparum epitope ensemble vaccines

scientific article published on 12 October 2017

Influenza C in Lancaster, UK, in the winter of 2014-2015.

scientific article

Integrating reptilian herpesviruses into the family herpesviridae

scientific article

LGAAP: <i>Leishmaniinae</i> Genome Assembly and Annotation Pipeline

publication published on 22 July 2021

Less is more: the battle of Moore's law against Bremermann's limit on the field of systems biology

article by Derek Gatherer published 2007 in BMC Systems Biology

Letter: TreeAdder: A Tool to Assist the Optimal Positioning of a New Leaf into an Existing Phylogenetic Tree

scholarly article by Derek Gatherer published 26 December 2007 in The open bioinformatics journal

Lineage structures in the genome sequences of three Epstein-Barr virus strains

scientific article published on 13 November 2006

Lymphocryptovirus phylogeny and the origins of Epstein-Barr virus

scientific article published on 18 November 2009

Meme Pools, World 3, and Averroes's Vision of Immortality

Modelling the structure of full-length Epstein-Barr virus nuclear antigen 1.

scientific article published on 11 July 2014

Molecular Evolution of the Herpesvirales

Molecular methods of virus detection in lymphoma.

scientific article

Mutations within a conserved region of the hepatitis C virus E2 glycoprotein that influence virus-receptor interactions and sensitivity to neutralizing antibodies.

scientific article

N-acetyl-cysteine causes a late re-specification of the anteroposterior axis in theXenopus embryo

scientific article published in April 1996

Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015.

scientific article published on 24 October 2017

Nitrogen-fixing aerobic bacteria have higher genomic GC content than non-fixing species within the same genus

scientific article published in January 1998

Non-random escape pathways from a broadly neutralizing human monoclonal antibody map to a highly conserved region on the hepatitis C virus E2 glycoprotein encompassing amino acids 412-423

scientific article

Novel cytomegaloviruses in free-ranging and captive great apes: phylogenetic evidence for bidirectional horizontal transmission

scientific article published on 24 June 2009

On Units of Selection in Cultural Evolution ⬇️

scientific article published on June 7, 1998

On phylogenetic relationships among major lineages of the Gammaherpesvirinae

scientific article published in February 2005

On the origin of influenza A hemagglutinin ⬇️

scientific article published on January 7, 2010

Passage in egg culture is a major cause of apparent positive selection in influenza B hemagglutinin

article

Patterns of divergence in the vCXCL and vGPCR gene clusters in primate cytomegalovirus genomes

scientific article

Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences

scientific article

Phylodynamic analysis of the historical spread of Toscana virus around the Mediterranean

Phylogenetic Differences in Content and Intensity of Periodic Proteins

scholarly article by Derek Gatherer & Neil R. McEwan published April 2005 in Journal of Molecular Evolution

RNASeq analysis of differentiated keratinocytes reveals a massive response to late events during human papillomavirus type 16 infection, including loss of epithelial barrier function

scientific article published on 11 October 2017

Reflections on integrating bioinformatics into the undergraduate curriculum: The Lancaster experience

scientific article published on 02 December 2019

Rosen's (M,R) system as an X-machine

scientific article published on 9 August 2016

Rosen's (M,R) system in Unified Modelling Language

scientific article published on 23 December 2015

Rosen's (M,R) system in process algebra

scientific article

Sequence Variation in Multidrug-Resistant Plasmid pLUH01, Isolated from Human Nasopharyngeal Swabs

Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host

Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host.

scientific article published on 3 June 2015

Sequences of complete human cytomegalovirus genomes from infected cell cultures and clinical specimens

scientific article

Small regions of preferential codon usage and their effect on overall codon bias - The case of the plp gene

article

Small regions of preferential codon usage and their effect on overall codon bias--the case of the plp gene

scientific article published in September 1997

So what do we really mean when we say that systems biology is holistic?

scientific article

Somitogenesis in the marsupial frog Gastrotheca riobambae

scientific article published on June 1, 1992

Stability of the parainfluenza virus 5 genome revealed by deep sequencing of strains isolated from different hosts and following passage in cell culture

scientific article published on 22 January 2014

Structural insights into calicivirus attachment and uncoating

scientific article

Tempo and mode in the molecular evolution of influenza C.

scientific article

Tempus et Locus: a tool for extracting precisely dated viral sequences from GenBank, and its application to the phylogenetics of primate erythroparvovirus 1 (B19V)

scholarly article published 1 July 2016

The 2009 H1N1 influenza outbreak in its historical context.

scientific article

The 2014 Ebola virus disease outbreak in West Africa

scientific article

The Genome of a Tortoise Herpesvirus (Testudinid Herpesvirus 3) Has a Novel Structure and Contains a Large Region That Is Not Required for Replication In Vitro or Virulence In Vivo

scientific article

The Little Ice Age and the emergence of influenza A.

scientific article

The Role of TGF? in Mouse Development ⬇️

scientific article published on January 1, 1990

The evolution of music—A comparison of Darwinian and dialectical methods

The family Parvoviridae

scientific article

The genome of Epstein-Barr virus type 2 strain AG876.

scientific article published on 21 February 2006

The mutational-response index and codon bias in genes from a Frankia nif operon

article

The serology of Ebolavirus - a wider geographical range, a wider genus of viruses or a wider range of virulence?

scientific article published on 21 October 2016

The unprecedented scale of the West African Ebola virus disease outbreak is due to environmental and sociological factors, not special attributes of the currently circulating strain of the virus

scientific article published on 18 December 2014

Towards the knowledge-based design of universal influenza epitope ensemble vaccines

scientific article published on 10 July 2016

Transforming growth factor betas in mammalian embryogenesis

scientific article published on January 1990

Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79.

scientific article published on 04 March 2016

Viral genotype correlates with distinct liver gene transcription signatures in chronic hepatitis C virus infection

scientific article published on 19 March 2015

Visualization of protein sequence space with force-directed graphs, and their application to the choice of target-template pairs for homology modelling

scientific article published on 26 July 2019

Zika virus: a previously slow pandemic spreads rapidly through the Americas

scientific article

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