List of works - Tjakko Abee

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis

scientific article

Biofilm formation and dispersal in Gram-positive bacteria

scientific article published on November 23, 2010

The role of sigmaB in the stress response of Gram-positive bacteria -- targets for food preservation and safety

scientific article

Germination of penicillium paneum Conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor

scientific article

The SOS response of Listeria monocytogenes is involved in stress resistance and mutagenesis

scientific article

Molecular and physiological analysis of the role of osmolyte transporters BetL, Gbu, and OpuC in growth of Listeria monocytogenes at low temperatures

scientific article

Effect of adaptation to ethanol on cytoplasmic and membrane protein profiles of Oenococcus oeni

scientific article

Assessment of CcpA-mediated catabolite control of gene expression in Bacillus cereus ATCC 14579.

scientific article

Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment

scientific article

Identification and characterization of Di- and tripeptide transporter DtpT of Listeria monocytogenes EGD-e

scientific article

Abiotic and microbiotic factors controlling biofilm formation by thermophilic sporeformers

scientific article

Short- and long-term biomarkers for bacterial robustness: a framework for quantifying correlations between cellular indicators and adaptive behavior

scientific article

From transcriptional landscapes to the identification of biomarkers for robustness

scientific article published on August 30, 2011

Role of ureolytic activity in Bacillus cereus nitrogen metabolism and acid survival

scientific article published on 22 February 2008

Identification of novel Salmonella enterica serovar Typhimurium DT104-specific prophage and nonprophage chromosomal sequences among serovar Typhimurium isolates by genomic subtractive hybridization

scientific article

Population diversity of Listeria monocytogenes LO28: phenotypic and genotypic characterization of variants resistant to high hydrostatic pressure

scientific article

Identification of sigmaB-dependent genes in Bacillus cereus by proteome and in vitro transcription analysis

scientific article published in July 2004

Bacterial Spores in Food: Survival, Emergence, and Outgrowth

scientific article

Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production

scientific article published on August 4, 2015

PlcRa, a new quorum-sensing regulator from Bacillus cereus, plays a role in oxidative stress responses and cysteine metabolism in stationary phase

scientific article

Impact of genomics on microbial food safety

scientific article

Comparative Genomics of Iron-Transporting Systems in Bacillus cereus Strains and Impact of Iron Sources on Growth and Biofilm Formation

scientific article

Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity

scientific article

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and Germination Characteristics

scientific article published on May 15, 2015

Catalase Activity as a Biomarker for Mild-Stress-Induced Robustness in Bacillus weihenstephanensis

scientific article published on October 12, 2012

Generation of variants in Listeria monocytogenes continuous-flow biofilms is dependent on radical-induced DNA damage and RecA-mediated repair

scientific article

Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium

scientific article

Identification of CdnL, a Putative Transcriptional Regulator Involved in Repair and Outgrowth of Heat-Damaged Bacillus cereus Spores

scientific article published on 5 February 2016

Genome-wide screen for Listeria monocytogenes genes important for growth at high temperatures

scientific article

List of works by Tjakko Abee

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis

Biofilm formation and dispersal in Gram-positive bacteria

The role of sigmaB in the stress response of Gram-positive bacteria -- targets for food preservation and safety

Germination of penicillium paneum Conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor

The SOS response of Listeria monocytogenes is involved in stress resistance and mutagenesis

Molecular and physiological analysis of the role of osmolyte transporters BetL, Gbu, and OpuC in growth of Listeria monocytogenes at low temperatures

Effect of adaptation to ethanol on cytoplasmic and membrane protein profiles of Oenococcus oeni

Assessment of CcpA-mediated catabolite control of gene expression in Bacillus cereus ATCC 14579.

Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment

Identification and characterization of Di- and tripeptide transporter DtpT of Listeria monocytogenes EGD-e

Abiotic and microbiotic factors controlling biofilm formation by thermophilic sporeformers

Short- and long-term biomarkers for bacterial robustness: a framework for quantifying correlations between cellular indicators and adaptive behavior

From transcriptional landscapes to the identification of biomarkers for robustness

Role of ureolytic activity in Bacillus cereus nitrogen metabolism and acid survival

Identification of novel Salmonella enterica serovar Typhimurium DT104-specific prophage and nonprophage chromosomal sequences among serovar Typhimurium isolates by genomic subtractive hybridization

Population diversity of Listeria monocytogenes LO28: phenotypic and genotypic characterization of variants resistant to high hydrostatic pressure

Identification of sigmaB-dependent genes in Bacillus cereus by proteome and in vitro transcription analysis

Bacterial Spores in Food: Survival, Emergence, and Outgrowth

Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production

PlcRa, a new quorum-sensing regulator from Bacillus cereus, plays a role in oxidative stress responses and cysteine metabolism in stationary phase

Impact of genomics on microbial food safety

Comparative Genomics of Iron-Transporting Systems in Bacillus cereus Strains and Impact of Iron Sources on Growth and Biofilm Formation

Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and Germination Characteristics

Catalase Activity as a Biomarker for Mild-Stress-Induced Robustness in Bacillus weihenstephanensis

Generation of variants in Listeria monocytogenes continuous-flow biofilms is dependent on radical-induced DNA damage and RecA-mediated repair

Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium

Identification of CdnL, a Putative Transcriptional Regulator Involved in Repair and Outgrowth of Heat-Damaged Bacillus cereus Spores

Genome-wide screen for Listeria monocytogenes genes important for growth at high temperatures