List of works - Yuji Isagi

A quantitative analysis of phenotypic variations of Metrosideros polymorpha within and across populations along environmental gradients on Mauna Loa, Hawaii

scientific article published on 11 August 2015

Application of a simplified method of chloroplast enrichment to small amounts of tissue for chloroplast genome sequencing

scientific article published on 8 May 2017

Biogeography of the Australian monsoon tropics

article

Chloroplast DNA sequencing and detailed microsatellite genotyping of all remnant populations suggests that only a single genet survives of the critically endangered plant Rehmannia japonica.

scientific article

Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia.

scientific article published on 31 May 2012

Climate, not Aboriginal landscape burning, controlled the historical demography and distribution of fire-sensitive conifer populations across Australia

scientific article (publication date: 22 December 2013)

Clonal structure and flowering traits of a bamboo [Phyllostachys pubescens (Mazel) Ohwi] stand grown from a simultaneous flowering as revealed by AFLP analysis

scientific article published on 01 July 2004

Complete genotyping in conservation genetics, a case study of a critically endangered shrub, Stachyurus macrocarpus var. prunifolius (Stachyuraceae) in the Ogasawara Islands, Japan.

scientific article

Complex pollination of a tropical Asian rainforest canopy tree by flower-feeding thrips and thrips-feeding predators.

scientific article published on 20 October 2016

Conservation value of non-native banteng in northern Australia

scientific article published in August 2006

Demography and selection analysis of the incipient adaptive radiation of a Hawaiian woody species

scientific article published on 21 January 2022

Determination of temperate bird-flower interactions as entangled mutualistic and antagonistic sub-networks: characterization at the network and species levels

scientific article published on 23 December 2013

Determining the location of a deceased mother tree and estimating forest regeneration variables by use of microsatellites and spatial genetic models

article

Development and characterization of EST-SSR markers for (Cyperaceae), an extremophyte in solfatara fields

scientific article published on 19 October 2018

Development of 17 microsatellite markers forCeratosolen constrictus,the pollinating fig wasp ofFicus fistulosa

article

Development of microsatellite markers for Euryale ferox (Nymphaeaceae), an endangered aquatic plant species in Japan.

scientific article

Development of microsatellite markers for Stachyurus macrocarpus and Stachyurus macrocarpus var. prunifolius (Stachyuraceae), critically endangered shrub species endemic to the Bonin Islands

scientific article published on 30 January 2009

Development of microsatellite markers for the coastal shrub Scaevola taccada (Goodeniaceae).

scientific article published on 18 April 2014

Development of microsatellite markers for the semi-natural grassland herb Veronicastrum japonicum (Plantaginaceae)

scientific article published on 11 February 2016

Development of nuclear SSRs for the insular shrub Clerodendrum izuinsulare (Verbenaceae) and the widespread C. trichotomum

article

Development of nuclear and chloroplast microsatellite markers for the endangered conifer Callitris sulcata (Cupressaceae).

scientific article published on 10 August 2015

Diet analysis by next-generation sequencing indicates the frequent consumption of introduced plants by the critically endangered red-headed wood pigeon (Columba janthina nitens) in oceanic island habitats ⬇️

scientific article published on 19 September 2013

Ecological barriers to gene flow between riparian and forest species of Ainsliaea (Asteraceae).

scientific article published on 7 October 2010

Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis

scientific article published in January 2006

Environmental DNA reveals cryptic diversity within the subterranean amphipod genus Pseudocrangonyx Akatsuka & Komai, 1922 (Amphipoda: Crangonyctoidea: Pseudocrangonyctidae) from central Japan

scientific article published in 2020

Genetic consequences of plant edaphic specialization to solfatara fields: Phylogenetic and population genetic analysis of Carex angustisquama (Cyperaceae)

scientific article published on 04 December 2019

Genetic differentiation among populations of an oceanic island: The case ofMetrosideros boninensis, an endangered endemic tree species in the Bonin Islands

article

Genetic diversity and population structure of Nuphar submersa (Nymphaeaceae), a critically endangered aquatic plant endemic to Japan, and implications for its conservation

scientific article

Genetic diversity of the Japanese wood pigeon, Columba janthina, endemic to islands of East Asia, estimated by newly developed microsatellite markers

scientific article published in December 2011

Genetic evidence for paternal inheritance of the chloroplast in four Australian Callitris species (Cupressaceae)

article

Genetic structure of introduced swamp buffalo subpopulations in tropical Australia

article

Genetic variation and structure of the endangered Lady Fern Athyrium viridescentipes based on ubiquitous genotyping.

scientific article

Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations.

scientific article

High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species

article

Identification of two mutations that cause defects in the ligninolytic system through an efficient forward genetics in the white-rot agaricomycete Pleurotus ostreatus

scientific article published on 21 November 2016

Inferring historical survivals of climate relicts: the effects of climate changes, geography, and population-specific factors on herbaceous hydrangeas

scientific article published on 28 January 2021

Interspecific and annual variation in pre-dispersal seed predation by a granivorous bird in two East Asian hackberries, Celtis biondii and Celtis sinensis

scientific article published on 2 December 2011

Isolation and characterization of 10 microsatellite loci in Callicarpa subpubescens (Verbenaceae), an endemic species of the Bonin Islands

scientific article published on 20 August 2008

Isolation and characterization of 11 microsatellite loci in Swida controversa (Cornaceae)

Isolation and characterization of 52 polymorphic EST-SSR markers for Callitris columellaris (Cupressaceae).

scientific article

Isolation and characterization of microsatellite loci in a clonal herb, Cardamine leucantha (Brassicaceae).

scientific article published on 23 November 2011

Isolation and characterization of microsatellite loci inAinsliaea faurieana(Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa

article

Isolation and characterization of novel microsatellite loci for the endangered orchid Cypripedium japonicum (Orchidaceae).

scientific article published on 11 February 2016

Lineage admixture during postglacial range expansion is responsible for the increased gene diversity of Kalopanax septemlobus in a recently colonised territory ⬇️

scientific article (publication date: October 2011)

Livistona palms in Australia: ancient relics or opportunistic immigrants?

scientific article published on 17 September 2009

Low genetic diversity in the bottlenecked population of endangered non-native banteng in northern Australia

scientific article

Microsatellite analysis of the regeneration process of Magnolia obovata Thunb

scientific article published on 01 February 2000

Microsatellite loci in an endangered fern species, Athyrium viridescentipes (Woodsiaceae), and cross-species amplification.

scientific article

Microsatellite markers for Nuphar japonica (Nymphaeaceae), an aquatic plant in the agricultural ecosystem of Japan

scientific article (publication date: December 2016)

Multiple and mass introductions from limited origins: genetic diversity and structure of Solidago altissima in the native and invaded range

scientific article published on 30 September 2015

Multiple introgression events and range shifts inSchizocodon(Diapensiaceae) during the Pleistocene

scientific article published in 2013

Multiple spatial scale patterns of genetic diversity in riparian populations ofAinsliaea faurieana(Asteraceae) on Yakushima Island, Japan ⬇️

scientific article published on December 10, 2009

Not an ancient relic: the endemic Livistona palms of arid central Australia could have been introduced by humans

scientific article (publication date: 7 July 2012)

Outcrossing rates and organelle inheritance estimated from two natural populations of the Japanese endemic conifer Sciadopitys verticillata.

scientific article

Patterns and levels of gene flow in Rhododendron metternichii var. hondoense revealed by microsatellite analysis

article

Phylogeography of an Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes

scientific article published on 14 July 2006

Pollination efficiencies of flower-visiting insects as determined by direct genetic analysis of pollen origin.

scientific article published in August 2008

Polymorphic microsatellite DNA markers in the asiatic black bear Ursus thibetanus

scientific article published in October 2000

Population and genetic status of a critically endangered species in Korea, Euchresta japonica (Leguminosae), and their implications for conservation

Predominance of a single clone of the most widely distributed bamboo species Phyllostachys edulis in East Asia.

scientific article published on 18 November 2015

Quaternary range-shift history of Japanese wingnut (<i>Pterocarya rhoifolia</i>) in the Japanese Archipelago evidenced from chloroplast DNA and ecological niche modeling

scientific article published in 2017

Relatedness structure in Rhododendron metternichii var. hondoense revealed by microsatellite analysis.

scientific article published in March 2002

Seasonal and inter-island variation in the foraging strategy of the critically endangered Red-headed Wood PigeonColumba janthina nitensin disturbed island habitats derived from high-throughput sequencing

scientific article published in 2016

Seasonal changes in pollinator activity influence pollen dispersal and seed production of the alpine shrub Rhododendron aureum (Ericaceae).

scientific article published in April 2006

Shaping of genetic structure along Pleistocene and modern river systems in the hydrochorous riparian azalea, Rhododendron ripense (Ericaceae).

scientific article published on 6 July 2009

Stable persistence of relict populations involved evolutionary shifts of reproductive characters in the genus Tanakaea (Saxifragaceae) ⬇️

scientific article published on 21 March 2022

Temporal variations in seed dispersal patterns of a bird-dispersed tree, Swida controversa (Cornaceae), in a temperate forest

scientific article published in 2015

The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae).

scientific article published on 18 January 2017

Turnover of southern cypresses in the post-Gondwanan world: extinction, transoceanic dispersal, adaptation and rediversification

scientific article published on 23 November 2018

Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae).

scientific article published on 15 September 2016

Variation in pollen dispersal between years with different pollination conditions in a tropical emergent tree.

scientific article published on November 2004

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing

scientific article

List of works by Yuji Isagi

A quantitative analysis of phenotypic variations of Metrosideros polymorpha within and across populations along environmental gradients on Mauna Loa, Hawaii

Application of a simplified method of chloroplast enrichment to small amounts of tissue for chloroplast genome sequencing

Biogeography of the Australian monsoon tropics

Chloroplast DNA sequencing and detailed microsatellite genotyping of all remnant populations suggests that only a single genet survives of the critically endangered plant Rehmannia japonica.

Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia.

Climate, not Aboriginal landscape burning, controlled the historical demography and distribution of fire-sensitive conifer populations across Australia

Clonal structure and flowering traits of a bamboo [Phyllostachys pubescens (Mazel) Ohwi] stand grown from a simultaneous flowering as revealed by AFLP analysis

Complete genotyping in conservation genetics, a case study of a critically endangered shrub, Stachyurus macrocarpus var. prunifolius (Stachyuraceae) in the Ogasawara Islands, Japan.

Complex pollination of a tropical Asian rainforest canopy tree by flower-feeding thrips and thrips-feeding predators.

Conservation value of non-native banteng in northern Australia

Demography and selection analysis of the incipient adaptive radiation of a Hawaiian woody species

Determination of temperate bird-flower interactions as entangled mutualistic and antagonistic sub-networks: characterization at the network and species levels

Determining the location of a deceased mother tree and estimating forest regeneration variables by use of microsatellites and spatial genetic models

Development and characterization of EST-SSR markers for (Cyperaceae), an extremophyte in solfatara fields

Development of 17 microsatellite markers forCeratosolen constrictus,the pollinating fig wasp ofFicus fistulosa

Development of microsatellite markers for Euryale ferox (Nymphaeaceae), an endangered aquatic plant species in Japan.

Development of microsatellite markers for Stachyurus macrocarpus and Stachyurus macrocarpus var. prunifolius (Stachyuraceae), critically endangered shrub species endemic to the Bonin Islands

Development of microsatellite markers for the coastal shrub Scaevola taccada (Goodeniaceae).

Development of microsatellite markers for the semi-natural grassland herb Veronicastrum japonicum (Plantaginaceae)

Development of nuclear SSRs for the insular shrub Clerodendrum izuinsulare (Verbenaceae) and the widespread C. trichotomum

Development of nuclear and chloroplast microsatellite markers for the endangered conifer Callitris sulcata (Cupressaceae).

Diet analysis by next-generation sequencing indicates the frequent consumption of introduced plants by the critically endangered red-headed wood pigeon (Columba janthina nitens) in oceanic island habitats ⬇️

Ecological barriers to gene flow between riparian and forest species of Ainsliaea (Asteraceae).

Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis

Environmental DNA reveals cryptic diversity within the subterranean amphipod genus Pseudocrangonyx Akatsuka & Komai, 1922 (Amphipoda: Crangonyctoidea: Pseudocrangonyctidae) from central Japan

Genetic consequences of plant edaphic specialization to solfatara fields: Phylogenetic and population genetic analysis of Carex angustisquama (Cyperaceae)

Genetic differentiation among populations of an oceanic island: The case ofMetrosideros boninensis, an endangered endemic tree species in the Bonin Islands

Genetic diversity and population structure of Nuphar submersa (Nymphaeaceae), a critically endangered aquatic plant endemic to Japan, and implications for its conservation

Genetic diversity of the Japanese wood pigeon, Columba janthina, endemic to islands of East Asia, estimated by newly developed microsatellite markers

Genetic evidence for paternal inheritance of the chloroplast in four Australian Callitris species (Cupressaceae)

Genetic structure of introduced swamp buffalo subpopulations in tropical Australia

Genetic variation and structure of the endangered Lady Fern Athyrium viridescentipes based on ubiquitous genotyping.

Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations.

High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species

Identification of two mutations that cause defects in the ligninolytic system through an efficient forward genetics in the white-rot agaricomycete Pleurotus ostreatus

Inferring historical survivals of climate relicts: the effects of climate changes, geography, and population-specific factors on herbaceous hydrangeas

Interspecific and annual variation in pre-dispersal seed predation by a granivorous bird in two East Asian hackberries, Celtis biondii and Celtis sinensis

Isolation and characterization of 10 microsatellite loci in Callicarpa subpubescens (Verbenaceae), an endemic species of the Bonin Islands

Isolation and characterization of 11 microsatellite loci in Swida controversa (Cornaceae)

Isolation and characterization of 52 polymorphic EST-SSR markers for Callitris columellaris (Cupressaceae).

Isolation and characterization of microsatellite loci in a clonal herb, Cardamine leucantha (Brassicaceae).

Isolation and characterization of microsatellite loci inAinsliaea faurieana(Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa

Isolation and characterization of novel microsatellite loci for the endangered orchid Cypripedium japonicum (Orchidaceae).

Lineage admixture during postglacial range expansion is responsible for the increased gene diversity of Kalopanax septemlobus in a recently colonised territory ⬇️

Livistona palms in Australia: ancient relics or opportunistic immigrants?

Low genetic diversity in the bottlenecked population of endangered non-native banteng in northern Australia

Microsatellite analysis of the regeneration process of Magnolia obovata Thunb

Microsatellite loci in an endangered fern species, Athyrium viridescentipes (Woodsiaceae), and cross-species amplification.

Microsatellite markers for Nuphar japonica (Nymphaeaceae), an aquatic plant in the agricultural ecosystem of Japan

Multiple and mass introductions from limited origins: genetic diversity and structure of Solidago altissima in the native and invaded range

Multiple introgression events and range shifts inSchizocodon(Diapensiaceae) during the Pleistocene

Multiple spatial scale patterns of genetic diversity in riparian populations ofAinsliaea faurieana(Asteraceae) on Yakushima Island, Japan ⬇️

Not an ancient relic: the endemic Livistona palms of arid central Australia could have been introduced by humans

Outcrossing rates and organelle inheritance estimated from two natural populations of the Japanese endemic conifer Sciadopitys verticillata.

Patterns and levels of gene flow in Rhododendron metternichii var. hondoense revealed by microsatellite analysis

Phylogeography of an Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes

Pollination efficiencies of flower-visiting insects as determined by direct genetic analysis of pollen origin.

Polymorphic microsatellite DNA markers in the asiatic black bear Ursus thibetanus

Population and genetic status of a critically endangered species in Korea, Euchresta japonica (Leguminosae), and their implications for conservation

Predominance of a single clone of the most widely distributed bamboo species Phyllostachys edulis in East Asia.

Quaternary range-shift history of Japanese wingnut (<i>Pterocarya rhoifolia</i>) in the Japanese Archipelago evidenced from chloroplast DNA and ecological niche modeling

Relatedness structure in Rhododendron metternichii var. hondoense revealed by microsatellite analysis.

Seasonal and inter-island variation in the foraging strategy of the critically endangered Red-headed Wood PigeonColumba janthina nitensin disturbed island habitats derived from high-throughput sequencing

Seasonal changes in pollinator activity influence pollen dispersal and seed production of the alpine shrub Rhododendron aureum (Ericaceae).

Shaping of genetic structure along Pleistocene and modern river systems in the hydrochorous riparian azalea, Rhododendron ripense (Ericaceae).

Stable persistence of relict populations involved evolutionary shifts of reproductive characters in the genus Tanakaea (Saxifragaceae) ⬇️

Temporal variations in seed dispersal patterns of a bird-dispersed tree, Swida controversa (Cornaceae), in a temperate forest

The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae).

Turnover of southern cypresses in the post-Gondwanan world: extinction, transoceanic dispersal, adaptation and rediversification

Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae).

Variation in pollen dispersal between years with different pollination conditions in a tropical emergent tree.

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing