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List of works by Kazuhiro Takemoto

A network biology-based approach to evaluating the effect of environmental contaminants on human interactome and diseases

scientific article published on 29 May 2018

An automated system for evaluation of the potential functionome: MAPLE version 2.1.0.

scientific article published on 3 July 2016

An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteins

scientific article

Analysis of the Effect of Degree Correlation on the Size of Minimum Dominating Sets in Complex Networks

scientific article

Brain structural connectivity and neuroticism in healthy adults

scientific article published in Scientific Reports

Climatic seasonality may affect ecological network structure: food webs and mutualistic networks

scientific article published on 4 June 2014

Correlation between structure and temperature in prokaryotic metabolic networks

scientific article

Current understanding of the formation and adaptation of metabolic systems based on network theory

scientific article

Data integration aids understanding of butterfly-host plant networks

scientific article

Decomposing the effects of ocean environments on predator-prey body-size relationships in food webs

scientific article published on 18 July 2018

Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement ⬇️

scientific article published on June 24, 2011

Difficulty in inferring microbial community structure based on co-occurrence network approaches

scientific article published on 13 June 2019

Does Habitat Variability Really Promote Metabolic Network Modularity? ⬇️

scientific article published on April 12, 2013

Evolving networks by merging cliques

scientific article published on 17 October 2005

Exosomes in mammals with greater habitat variability contain more proteins and RNAs

scientific article published on 26 April 2017

FunSAV: predicting the functional effect of single amino acid variants using a two-stage random forest model

scientific article

Functional Classification of Uncultured "Candidatus Caldiarchaeum subterraneum" Using the Maple System

scientific article published on 21 July 2015

Global COVID-19 transmission rate is influenced by precipitation seasonality and the speed of climate temperature warming

scientific article published on 14 April 2020

Global architecture of metabolite distributions across species and its formation mechanisms

scientific article published on 11 December 2009

Habitat variability does not generally promote metabolic network modularity in flies and mammals

scientific article published on 23 December 2015

Heterogeneity in ecological mutualistic networks dominantly determines community stability.

scientific article

Heterogeneity of cells may explain allometric scaling of metabolic rate ⬇️

scientific article published on 7 February 2015

Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers

scientific article published on September 2012

Importance of metabolic rate to the relationship between the number of genes in a functional category and body size in Peto's paradox for cancer

scientific article

Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding

scientific article published on 12 January 2018

Limitations of a metabolic network-based reverse ecology method for inferring host-pathogen interactions

scientific article published on 25 May 2017

Limited influence of oxygen on the evolution of chemical diversity in metabolic networks.

scientific article published on 16 October 2013

MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes

scientific article published on 24 May 2018

Metabolic network modularity arising from simple growth processes ⬇️

scientific article published on September 11, 2012

Metabolic network modularity in archaea depends on growth conditions

scientific article

Metabolic networks are almost nonfractal: A comprehensive evaluation ⬇️

scientific article published on 04 August 2014

Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity

scientific article published on 11 November 2006

Modular organization of cancer signaling networks is associated with patient survivability

scientific article published on 25 June 2013

Natural Images Allow Universal Adversarial Attacks on Medical Image Classification Using Deep Neural Networks with Transfer Learning

scientific article published on 04 February 2022

Nested structure acquired through simple evolutionary process

scientific article

Network resilience of mutualistic ecosystems and environmental changes: an empirical study

scientific article published on 12 September 2018

Origin of structural difference in metabolic networks with respect to temperature

scientific article

PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework

scientific article published on 30 January 2018

Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

scientific article published on 12 February 2020

Systematic Protein Level Regulation via Degradation Machinery Induced by Genotoxic Drugs

scientific article published in December 2015

The proportion of genes in a functional category is linked to mass-specific metabolic rate and lifespan

scientific article published on 6 May 2015

Universal adversarial attacks on deep neural networks for medical image classification

scientific article published on 07 January 2021

Vulnerability of deep neural networks for detecting COVID-19 cases from chest X-ray images to universal adversarial attacks

scientific article published on 17 December 2020

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