List of works - Vivek Anantharaman

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes.

scientific article published on 21 August 2008

ATP hydrolysis by a domain related to translation factor GTPases drives polymerization of a static bacterial morphogenetic protein

scientific journal article

Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics

scientific article

An autoinhibitory conformation of the Bacillus subtilis spore coat protein SpoIVA prevents its premature ATP-independent aggregation

scientific article

Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites

scientific article

Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins

scientific article

Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria

scientific article

Apprehending multicellularity: regulatory networks, genomics, and evolution

scientific article

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

scientific article published on 30 April 2014

Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors

scientific article

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

scientific article published on September 2004

Comparative genomics and evolution of proteins involved in RNA metabolism

scientific article

Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation

scientific article

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

scientific article

Comparative genomics uncovers novel structural and functional features of the heterotrimeric GTPase signaling system

scientific article

Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex

scientific article

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing

scientific article

Diversification of catalytic activities and ligand interactions in the protein fold shared by the sugar isomerases, eIF2B, DeoR transcription factors, acyl-CoA transferases and methenyltetrahydrofolate synthetase.

scientific article

Effects of Nucleoside Analogs on Native and Site-Directed Mutants of HTLV Type 1 Reverse Transcriptase

scientific article published in October 2000

Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins

scientific article

Evolution of Eukaryotic Chromatin Proteins and Transcription Factors

Evolutionary connections between bacterial and eukaryotic signaling systems: a genomic perspective

scientific article

Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes

scientific article

Expression, Purification, and Biological Characterization of Babesia microti Apical Membrane Antigen 1.

scientific article published on 20 July 2015

Gene flow and biological conflict systems in the origin and evolution of eukaryotes

scientific article

Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells

scientific article

Host biomarkers and biological pathways that are associated with the expression of experimental cerebral malaria in mice

scientific article published on 21 July 2008

HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold

scientific article

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

scientific article

MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems

scientific article

MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases

scientific article (publication date: 22 January 2002)

Molecular Markers of Radiation Induced Attenuation in Intrahepatic Plasmodium falciparum Parasites

scientific article

Molecular correlates of experimental cerebral malaria detectable in whole blood

scientific article

Molecular factors and biochemical pathways induced by febrile temperature in intraerythrocytic Plasmodium falciparum parasites

scientific article published on 5 February 2007

Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.

scientific article

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

scientific article

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability

scientific article

Novel eukaryotic enzymes modifying cell-surface biopolymers

scientific article

OST-HTH: a novel predicted RNA-binding domain

scientific article

Pathogenic roles of CD14, galectin-3, and OX40 during experimental cerebral malaria in mice

scientific article

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics

scientific article

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains

scientific article

Radiation-induced cellular and molecular alterations in asexual intraerythrocytic Plasmodium falciparum

scientific article

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

scientific article

SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases.

scientific article

Structure-function analysis of manganese exporter proteins across bacteria

scientific article published on 13 February 2018

TCRβ-expressing macrophages induced by a pathogenic murine malaria correlate with parasite burden and enhanced phagocytic activity

scientific article published in PLoS ONE

TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes

scholarly article by Vivek Anantharaman published in April 2001

Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing

scientific article

The DOMON domains are involved in heme and sugar recognition

scientific article

The GOLD domain, a novel protein module involved in Golgi function and secretion

scientific article

The NYN domains: novel predicted RNAses with a PIN domain-like fold

scientific article

The PRC-barrel: a widespread, conserved domain shared by photosynthetic reaction center subunits and proteins of RNA metabolism.

scientific article

The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies.

scientific article

The many faces of the helix-turn-helix domain: transcription regulation and beyond

scientific article (publication date: April 2005)

The mechanism of force transmission at bacterial focal adhesion complexes.

scientific article

The signaling helix: a common functional theme in diverse signaling proteins

scientific article

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism ⬇️

scientific article published on September 8, 2003

The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element

scientific article

Variations on a theme: evolution of the phage-shock-protein system in Actinobacteria.

scientific article published on 27 February 2018

List of works by Vivek Anantharaman

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes.

ATP hydrolysis by a domain related to translation factor GTPases drives polymerization of a static bacterial morphogenetic protein

Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics

An autoinhibitory conformation of the Bacillus subtilis spore coat protein SpoIVA prevents its premature ATP-independent aggregation

Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites

Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins

Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria

Apprehending multicellularity: regulatory networks, genomics, and evolution

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

Comparative genomics and evolution of proteins involved in RNA metabolism

Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

Comparative genomics uncovers novel structural and functional features of the heterotrimeric GTPase signaling system

Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing

Diversification of catalytic activities and ligand interactions in the protein fold shared by the sugar isomerases, eIF2B, DeoR transcription factors, acyl-CoA transferases and methenyltetrahydrofolate synthetase.

Effects of Nucleoside Analogs on Native and Site-Directed Mutants of HTLV Type 1 Reverse Transcriptase

Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins

Evolution of Eukaryotic Chromatin Proteins and Transcription Factors

Evolutionary connections between bacterial and eukaryotic signaling systems: a genomic perspective

Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes

Expression, Purification, and Biological Characterization of Babesia microti Apical Membrane Antigen 1.

Gene flow and biological conflict systems in the origin and evolution of eukaryotes

Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells

Host biomarkers and biological pathways that are associated with the expression of experimental cerebral malaria in mice

HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems

MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases

Molecular Markers of Radiation Induced Attenuation in Intrahepatic Plasmodium falciparum Parasites

Molecular correlates of experimental cerebral malaria detectable in whole blood

Molecular factors and biochemical pathways induced by febrile temperature in intraerythrocytic Plasmodium falciparum parasites

Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability

Novel eukaryotic enzymes modifying cell-surface biopolymers

OST-HTH: a novel predicted RNA-binding domain

Pathogenic roles of CD14, galectin-3, and OX40 during experimental cerebral malaria in mice

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains

Radiation-induced cellular and molecular alterations in asexual intraerythrocytic Plasmodium falciparum

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases.

Structure-function analysis of manganese exporter proteins across bacteria

TCRβ-expressing macrophages induced by a pathogenic murine malaria correlate with parasite burden and enhanced phagocytic activity

TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes

Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing

The DOMON domains are involved in heme and sugar recognition

The GOLD domain, a novel protein module involved in Golgi function and secretion

The NYN domains: novel predicted RNAses with a PIN domain-like fold

The PRC-barrel: a widespread, conserved domain shared by photosynthetic reaction center subunits and proteins of RNA metabolism.

The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies.

The many faces of the helix-turn-helix domain: transcription regulation and beyond

The mechanism of force transmission at bacterial focal adhesion complexes.

The signaling helix: a common functional theme in diverse signaling proteins

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism ⬇️

The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element

Variations on a theme: evolution of the phage-shock-protein system in Actinobacteria.