List of works - Ola Wallerman

A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection

scientific article published on 24 October 2019

Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression

scientific article

Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

scientific article

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa

scientific article

ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer

scientific article

Common VKORC1 and GGCX polymorphisms associated with warfarin dose

scientific article

Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma

scientific article

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq

scientific article published in 2009

Evidence for a second gene for primary microcephaly at MCPH5 on chromosome 1.

scientific article published on January 2003

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

scientific article published on 25 June 2021

Functional role of P-glycoprotein in the human blood-placental barrier

scientific article published in August 2005

Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

scientific article published on 08 February 2022

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Influence of adenosine triphosphate and ABCB1 (MDR1) genotype on the P-glycoprotein-dependent transfer of saquinavir in the dually perfused human placenta

scientific article published in January 2008

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells

scientific article published on 08 August 2014

Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro

scientific article published on 11 January 2016

Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing

scientific article published on December 2009

Nucleosome regulatory dynamics in response to TGFβ

scientific article

Placental transfer of quetiapine in relation to P-glycoprotein activity

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

scientific article published on 16 September 2020

Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

article

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

scientific article published on 28 April 2023

Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells

scientific article published on 16 September 2013

Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells

scientific article published on 8 June 2015

Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors.

scientific article

ZBED6 modulates the transcription of myogenic genes in mouse myoblast cells

scientific article

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

scientific article

lobChIP: from cells to sequencing ready ChIP libraries in a single day.

scientific article published on 21 July 2015

List of works by Ola Wallerman

A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection

Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression

Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa

ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer

Common VKORC1 and GGCX polymorphisms associated with warfarin dose

Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq

Evidence for a second gene for primary microcephaly at MCPH5 on chromosome 1.

Evolutionary constraint and innovation across hundreds of placental mammals

Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

Functional role of P-glycoprotein in the human blood-placental barrier

Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Influence of adenosine triphosphate and ABCB1 (MDR1) genotype on the P-glycoprotein-dependent transfer of saquinavir in the dually perfused human placenta

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells

Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro

Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing

Nucleosome regulatory dynamics in response to TGFβ

Placental transfer of quetiapine in relation to P-glycoprotein activity

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells

Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells

Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors.

ZBED6 modulates the transcription of myogenic genes in mouse myoblast cells

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

lobChIP: from cells to sequencing ready ChIP libraries in a single day.