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List of works by Felipe da Veiga Leprevost

A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom

scientific article

BioContainers: An open-source and community-driven framework for software standardization

scientific article

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.

scientific article

Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry

scientific article published on 26 February 2020

Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification

scientific article published on 01 November 2021

Discovering and linking public omics data sets using the Omics Discovery Index.

scientific article

Effectively addressing complex proteomic search spaces with peptide spectrum matching

scientific article published on 27 February 2013

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

scientific article published on 25 November 2020

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

scientific article

MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics

scientific article published on 10 April 2017

On best practices in the development of bioinformatics software

scientific article published on 2 July 2014

PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results

scientific article published on 01 December 2020

PepExplorer: a similarity-driven tool for analyzing de novo sequencing results

scientific article published on 30 May 2014

Philosopher: a versatile toolkit for shotgun proteomics data analysis

scientific article published on 15 July 2020

Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics

scientific article published on 21 June 2013

Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

scientific article published on 01 July 2020

Proteogenomic characterization of pancreatic ductal adenocarcinoma

scientific article published on 01 September 2021

Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2.

scientific article published on 27 August 2016

Recommendations for the packaging and containerizing of bioinformatics software

Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes

scientific article published on 20 December 2014

Regulation of ALT-associated homology-directed repair by polyADP-ribosylation

scientific article published on 12 October 2020

Ten Simple Rules for Taking Advantage of Git and GitHub

scientific article (publication date: July 2016)

Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2

scientific article published on 11 June 2019

Venomous extract protein profile of Brazilian tarantula Grammostola iheringi: searching for potential biotechnological applications.

scientific article

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