List of works by Stian Soiland-Reyes

A workflow PROV-corpus based on taverna and wings

Automated manipulation of systems biology models using libSBML within Taverna workflows

scientific article

BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows

scientific article published on 10 September 2019

BioHackEU22 Project 22: Plant data exchange and standard interoperability

BioHackEU22 Report: Enhancing Research Data Management in Galaxy and Data Stewardship Wizard by utilising RO-Crates

BioHackEU23 report: Enabling FAIR Digital Objects with RO-Crate, Signposting and Bioschemas

BioHackEU23: FAIR Workflow Execution with WfExS and Workflow Run Crate

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

scientific article

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid ⬇️

scientific article (publication date: 2 November 2010)

Community-driven development for computational biology at Sprints, Hackathons and Codefests

scientific article

Creating lightweight FAIR Digital Objects with RO-Crate

scientific article published in 2022

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

scientific article published on 31 December 2018

Enhancing RDM in Galaxy by integrating RO-Crate

scientific article published in 2022

Evaluating FAIR Digital Object and Linked Data as distributed object systems

scientific article published in 2024

FAIR Computational Workflows

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

scientific article

Fostering Scientific Workflow Preservation through Discovery of Substitute Services

I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows

scientific article published in 2022

Methods included: Standardizing computational reuse and portability with the Common Workflow Language

scientific article published in June 2022

PAV ontology: provenance, authoring and versioning

scientific article

Packaging research artefacts with RO-Crate

scientific article published on 20 July 2022

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data

scientific article

Perspectives on automated composition of workflows in the life sciences

scientific article

RO-Crate Metadata Specification 1.1.1

academic document

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis

Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach

Semantic micro-contributions with decentralized nanopublication services

scientific article

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

scientific article published on 01 November 2019

Structuring research methods and data with the research object model: genomics workflows as a case study

scientific article

Taverna Mobile: Taverna workflows on Android

Taverna, Reloaded

Ten simple rules for making a software tool workflow-ready

scientific article published on 24 March 2022

The Specimen Data Refinery: Using a scientific workflow approach for information extraction

scientific article published in 2022

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

scientific article

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR

Updating Linked Data practices for FAIR Digital Object principles

scientific article published in 2022

Using Webby FDOs to Integrate AI Taxon Identification and Citizen Science

scientific article published in 2024

Web Annotation as a First-Class Object

Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments

scholarly article by Kristina M. Hettne et al published 2012 in Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences - SWAT4LS '11

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