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List of works by Jeff J. Doyle

5S Nuclear Ribosomal Gene Variation in the Glycine tomentella Polyploid Complex (Leguminosae)

scientific article published in 1989

: A Non-polyploid Genomic Relic Within the Generally Polyploid Legume Family

scientific article published in 2019

A CHLOROPLAST-DNA PHYLOGENY OF THE WILD PERENNIAL RELATIVES OF SOYBEAN (GLYCINE SUBGENUS GLYCINE): CONGRUENCE WITH MORPHOLOGICAL AND CROSSING GROUPS.

scientific article

A Chloroplast DNA Inversion as a Subtribal Character in the Phaseoleae (Leguminosae)

scientific article published in 1990

A Resurrected Scenario: Single Gain and Massive Loss of Nitrogen-Fixing Nodulation

scientific article published on 05 November 2018

A Review on Current Status and Future Prospects of Winged Bean (Psophocarpus tetragonolobus) in Tropical Agriculture

scientific article published on 2 September 2017

A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species

scientific article published on 01 February 2012

A comparison of global, gene-specific, and relaxed clock methods in a comparative genomics framework: dating the polyploid history of soybean (Glycine max).

scientific article

A phylogeny of the chloroplast gene rbcL in the Leguminosae: taxonomic correlations and insights into the evolution of nodulation

scientific article published on April 1, 1997

Anatomical, biochemical, and photosynthetic responses to recent allopolyploidy in Glycine dolichocarpa (Fabaceae).

scientific article published on 30 December 2011

Autopolyploidy: an epigenetic macromutation

scientific article published on 01 August 2020

Cell types as species: Exploring a metaphor

scientific article published on 22 August 2022

Characterization of 12 polymorphic microsatellite markers for Georgia false indigo (Amorpha georgiana Wilbur var. georgiana), an endangered species, and their utility in other dwarf Amorpha L. species

scientific article

Characterizing the allopolyploid species among the wild relatives of soybean: Utility of reduced representation genotyping methodologies

Chasing unicorns: Nodulation origins and the paradox of novelty

scientific article published on 18 October 2016

Chloroplast DNA Phylogenetic Affinities of Newly Described Species in Glycine (Leguminosae: Phaseoleae)

article by Jeff J. Doyle et al published July 1990 in Systematic Botany

Chloroplast DNA Phylogenetic Studies in New World Phaseolinae (Leguminosae: Papilionoideae: Phaseoleae)

scientific article published in 1993

Chloroplast DNA Phylogeny of Old World Vigna (Leguminosae)

scholarly article by Rene E. Vaillancourt et al published October 1993 in Systematic Botany

Chloroplast DNA Phylogeny of the Papilionoid Legume Tribe Phaseoleae

scholarly article by Jeff J. Doyle & Jane L. Doyle published April 1993 in Systematic Botany

Chloroplast-Expressed Glutamine Synthetase in Glycine and Related Leguminosae: Phylogeny, Gene Duplication, and Ancient Polyploidy

scientific article published in 2003

Cladistic Analysis of Chloroplast DNA Restriction Site Characters in Erythrina (Leguminosae: Phaseoleae)

scientific article published in April 1993

Cladistic Analysis of Restriction Site Variation within the Chloroplast DNA Inverted Repeat Region of Selected Hamamelididae

scientific article published in 1993

Climate niche modeling in the perennial Glycine (Leguminosae) allopolyploid complex

scientific article

Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication

scientific article published on 02 February 2011

Complete plastome sequences from Glycine syndetika and six additional perennial wild relatives of soybean

scientific article

Complex patterns of autopolyploid evolution in alfalfa and allies (Medicago sativa; Leguminosae) ⬇️

scientific article published on September 29, 2011

Confirmation of Shared and Divergent Genomes in the Glycine tabacina Polyploid Complex (Leguminosae) Using Histone H3-D Sequences

scientific article

Conservation genetics of Amorpha georgiana (Fabaceae), an endangered legume of the Southeastern United States

scientific article published on 18 September 2009

DISTRIBUTION AND EVOLUTION OF A GLUCOSEPHOSPHATE ISOMERASE DUPLICATION IN THE LEGUMINOSAE.

scientific article published in December 1989

Dating the origins of polyploidy events

scientific article published on 16 December 2009

De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu. ⬇️

scientific article published on 5 June 2018

Development of microsatellite markers in Lupinus luteus (Fabaceae) and cross‐species amplification in other lupine species ⬇️

scientific article published on July 26, 2010

Development of nuclear gene-derived molecular markers linked to legume genetic maps.

scientific article published on 27 April 2006

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

scientific article

Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine)

article published in 2003

Divergent evolutionary fates of major photosynthetic gene networks following gene and whole genome duplications.

scientific article

Double trouble: taxonomy and definitions of polyploidy

scientific article

EVOLUTIONARY SIGNIFICANCE OF THE LOSS OF THE CHLOROPLAST-DNA INVERTED REPEAT IN THE LEGUMINOSAE SUBFAMILY PAPILIONOIDEAE.

scientific article published on March 1990

Editorial

Enhanced rhizobial symbiotic capacity in an allopolyploid species of Glycine (Leguminosae).

scientific article

Erratum to: Population dynamics among six major groups of the Oryza rufipogon species complex, wild relative of cultivated Asian rice

scientific article published on 26 April 2017

Estimating genome conservation between crop and model legume species

scholarly article

Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine

scientific article published on 28 March 2012

Evolutionary Significance of the Loss of the Chloroplast-DNA Inverted Repeat in the Leguminosae Subfamily Papilionoideae

Evolutionary dynamics and preferential expression of homeologous 18S-5.8S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids

scientific article published on 14 April 2004

Evolutionary genetics of genome merger and doubling in plants

scientific article published on January 2008

Expression Partitioning of Duplicate Genes at Single Cell Resolution in Arabidopsis Roots

scientific article published on 03 November 2020

Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors.

scientific article published on 15 July 2016

Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa).

scientific article published on 31 January 2014

Fifteen compelling open questions in plant cell biology

scientific article published on 16 September 2021

First metatarsophalangeal joint dislocation with open fracture of tibial and fibular sesamoids

scientific article published on 01 March 2007

Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana

scientific article published on 17 March 2020

Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

scholarly article by Jeff J. Doyle published January 1992 in Systematic Botany

Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization

scientific article published on 03 November 2020

Genomes, multiple origins, and lineage recombination in the Glycine tomentella (Leguminosae) polyploid complex: histone H3-D gene sequences

scientific article published in July 2002

HecA, a member of a class of adhesins produced by diverse pathogenic bacteria, contributes to the attachment, aggregation, epidermal cell killing, and virulence phenotypes of Erwinia chrysanthemi EC16 on Nicotiana clevelandii seedlings

scientific article

ITS and ETS Sequence Data and Phylogeny Reconstruction in Allopolyploids and Hybrids

scientific article

Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex

scientific article published on 01 December 2002

Is Eragrostis (Poaceae) Monophyletic? Insights from Nuclear and Plastid Sequence Data

article by Amanda L. Ingram & Jeff J. Doyle published 1 July 2004 in Systematic Botany

Isolation and characterization of thirteen polymorphic microsatellite loci in the A-genome perennial group of the legume genus Glycine

scientific article

Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes

scientific article

Mining EST databases to resolve evolutionary events in major crop species

scientific article published in October 2004

Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex

scientific article

Molecular Systematics of Plants

scientific article (publication date: August 1992)

Molecular Systematics of Plants

article

Molecular and chromosomal evidence for allopolyploidy in soybean

scientific article published on 15 July 2009

Molecular phylogenetics of Amorpha (Fabaceae): an evaluation of monophyly, species relationships, and polyploid origins

scientific article

Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus ⬇️

scientific article published on April 11, 2013

Multiple Independent Losses of Two Genes and One Intron from Legume Chloroplast Genomes

scientific article published in 1995

Multiple origins and nrDNA internal transcribed spacer homeologue evolution in the Glycine tomentella (Leguminosae) allopolyploid complex

scientific article

Multiple origins of BBCC allopolyploid species in the rice genus (Oryza)

scientific article

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes

scientific article

Murine model of surgically induced acute aortic dissection type A

scientific article

Non-Additive Transcriptomic Responses to Inoculation with Rhizobia in a Young Allopolyploid Compared with Its Diploid Progenitors

scientific article

Origins and genetic conservation of tropical trees in agroforestry systems: a case study from the Peruvian Amazon

article

Origins of domestication and polyploidy in oca (Oxalis Tuberosa: Oxalidaceae). 2. Chloroplast‐expressed glutamine synthetase data ⬇️

scientific article published on July 1, 2002

Paleopolyploidy and gene duplication in soybean and other legumes

scientific article

Phylogenetic Relationships in North American Astragalus (Fabaceae) Based on Chloroplast DNA Restriction Site Variation

scientific article published in 1993

Phylogenetic perspectives on nodulation: evolving views of plants and symbiotic bacteria

article

Phylogenetic perspectives on the origins of nodulation ⬇️

scientific article published on November 1, 2011

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

scientific article published in Science

Phylogeny and Systematics of Sphenostylis and Nesphostylis (Leguminosae: Phaseoleae) Based on Morphological and Chloroplast DNA Data

scholarly article by Daniel Potter & Jeff J. Doyle published July 1994 in Systematic Botany

Phylogeny of the Celastraceae inferred from phytochrome B gene sequence and morphology

article

Plastid DNA, Morphological Variation, and the Phylogenetic Species Concept: The Corallorhiza maculata (Orchidaceae) Complex

article published in 1994

Ploidy and Size at Multiple Scales in the Arabidopsis Sepal

scientific article published on 24 August 2018

Polymorphism for the Presence of the rpL2 Intron in Chloroplast Genomes of Bauhinia (Leguminosae)

scientific article published in 1997

Polyploidy did not predate the evolution of nodulation in all legumes

scientific article (publication date: 16 July 2010)

Polyploidy in Legumes

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

scientific article published on 12 October 2016

Preservation of Plant Samples for DNA Restriction Endonuclease Analysis

scientific article (publication date: November 1987)

Profile of Jeff Doyle

scientific article published in January 2010

Quantifying whole transcriptome size, a prerequisite for understanding transcriptome evolution across species: an example from a plant allopolyploid

scientific article

Reconstruction of the Evolution of Reproductive Characters in Pontederiaceae using Phylogenetic Evidence from Chloroplast DNA Restriction-Site Variation

scientific article published on August 1996

Redwoods break the rules

scientific article published in Nature

Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions

scientific article published in 2009

Relationships among Diploid Members of the Medicago sativa (Fabaceae) Species Complex Based on Chloroplast and Mitochondrial DNA Sequences

Replication of nonautonomous retroelements in soybean appears to be both recent and common

scientific article

Reproductively Isolated Polyploid Races of Glycine Tabcina (Leguminosae) Had Different Chloroplast Genome Donors

scientific article published in 1990

Robust Cytonuclear Coordination of Transcription in Nascent Arabidopsis thaliana Autopolyploids

scientific article published on 28 January 2020

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination

scientific article published on 01 June 2018

Selecting Nuclear Sequences for Fine Detail Molecular Phylogenetic Studies in Plants: A Computational Approach and Sequence Repository

scientific article published in 2012

Systematics of the Halimolobine Brassicaceae: Evidence from Three Loci and Morphology

scientific article published in 2002

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

scientific article

Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics.

scientific article published in March 2018

Testing a Hypothesis of Intergeneric Allopolyploidy in Vine Cacti (Cactaceae: Hylocereeae)

scientific article published in 2013

Testing the polyploid past of soybean using a low-copy nuclear gene--is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?

scientific article

The Charophycean green algae as model systems to study plant cell walls and other evolutionary adaptations that gave rise to land plants ⬇️

scientific article published on January 1, 2012

The Chloroplast rpl2 Intron and ORF184 as Phylogenetic Markers in the Legume Tribe Desmodieae

scientific article published in 1997

The Irrelevance of Allele Tree Topologies for Species Delimitation, and a Non-Topological Alternative

scientific article published in October 1995

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16 ⬇️

scientific article published on January 1, 2003

The rest of the iceberg. Legume diversity and evolution in a phylogenetic context

scientific article

The reticulate history of Medicago (Fabaceae).

scientific article

Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae).

scientific article

Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers.

scientific article

Tribal Relationships of Sphinctospermum (Leguminosae): Integration of Traditional and Chloroplast DNA Data

scientific article published in January 1991

Typification of Glycine tomentella (Fabaceae: Phaseoleae) with comments on its internal groups

scientific article

Variation in transcriptome size: are we getting the message?

scientific article

Venturing beyond beans and peas: what can we learn from Chamaecrista?

scientific article published on 15 September 2009

What we still don't know about polyploidy

scientific article published on October 2010

Whole-Genome Sequence of Synthesized Allopolyploids in <i>Cucumis</i> Reveals Insights into the Genome Evolution of Allopolyploidization

scientific article published on 15 February 2021

Widespread genome duplications throughout the history of flowering plants

scientific article

rbcL and Legume Phylogeny, with Particular Reference to Phaseoleae, Millettieae, and Allies

scientific article published in 2001

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