List of works - Andrea Sinz

A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions

scientific article published on 19 July 2019

A biuret-derived, MS-cleavable cross-linking reagent for protein structural analysis: A proof-of-principle study

scientific article published on 09 December 2019

A capillary monolithic trypsin reactor for efficient protein digestion in online and offline coupling to ESI and MALDI mass spectrometry

scientific article

A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein-protein interactions

scientific article published on 01 December 2018

A novel disulfide pattern in laminin-type epidermal growth factor-like (LE) modules of laminin β1 and γ1 chains

scientific article

A universal matrix‐assisted laser desorption/ionization cleavable cross‐linker for protein structure analysis ⬇️

scientific article published on January 15, 2011

Acidosis-Induced Changes in Proteome Patterns of the Prostate Cancer-Derived Tumor Cell Line AT-1.

scientific article

An Integrated Mass Spectrometry Based Approach to Probe the Structure of the Full-Length Wild-Type Tetrameric p53 Tumor Suppressor

scientific article

An innovative method to study target protein-drug interactions by mass spectrometry

scientific article

Analysis of nidogen-1/laminin γ1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modes

scientific article

Analyzing PPARα/Ligand Interactions by Chemical Cross-Linking and High-Resolution Mass Spectrometry ⬇️

scientific article published on January 1, 2013

Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis

scientific article

Azide-Modified Membrane Lipids: Synthesis, Properties, and Reactivity

scientific article

Carboxyl-Photo-Reactive MS-Cleavable Cross-Linkers: Unveiling a Hidden Aspect of Diazirine-Based Reagents

scientific article published on 27 January 2018

Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters

scientific article

Chemical Cross-Linking and High-Resolution Mass Spectrometry to Study Protein–Drug Interactions ⬇️

scientific article published on January 1, 2012

Chemical cross-linking and FTICR mass spectrometry for protein structure characterization.

scientific article

Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex

scientific article published in January 2005

Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

scientific article

Chemical cross-linking and native mass spectrometry: A fruitful combination for structural biology

scientific article

Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.

scientific article

Collision-induced dissociative chemical cross-linking reagent for protein structure characterization: applied Edman chemistry in the gas phase.

scientific article

Combining affinity enrichment, cross-linking with photo-amino acids, and mass spectrometry for probing protein kinase D2 interactions

scientific article

Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking

scientific article (publication date: December 2010)

Cross-Linking/Mass Spectrometry for Studying Protein Structures and Protein-Protein Interactions: Where Are We Now and Where Should We Go From Here?

scientific article published on 15 January 2018

Daffodil flowers delay senescence in cut Iris flowers

scientific article

Dissociation Behavior of a TEMPO-Active Ester Cross-Linker for Peptide Structure Analysis by Free Radical Initiated Peptide Sequencing (FRIPS) in Negative ESI-MS.

scientific article

Dissociation behavior of a bifunctional tempo-active ester reagent for peptide structure analysis by free radical initiated peptide sequencing (FRIPS) mass spectrometry

scientific article

Divide and conquer: cleavable cross-linkers to study protein conformation and protein-protein interactions

scientific article

Efficient electron transfer from hydrogen to benzyl viologen by the [NiFe]-hydrogenases of Escherichia coli is dependent on the coexpression of the iron-sulfur cluster-containing small subunit

scientific article

Expression and purification of the ligand-binding domain of peroxisome proliferator-activated receptor alpha (PPARalpha).

scientific article

Extending the cross-linking/mass spectrometry strategy: Facile incorporation of photo-activatable amino acids into the model protein calmodulin in Escherichia coli cells

scientific article

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

scientific article published on 22 May 2019

Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies

scientific article published on 08 May 2020

Fragmentation behavior of a thiourea-based reagent for protein structure analysis by collision-induced dissociative chemical cross-linking

scientific article

Global Proteomic Analysis of Advanced Glycation End Products in the Arabidopsis Proteome Provides Evidence for Age-related Glycation Hotspots

scientific article

Heterobifunctional isotope-labeled amine-reactive photo-cross-linker for structural investigation of proteins by matrix-assisted laser desorption/ionization tandem time-of-flight and electrospray ionization LTQ-Orbitrap mass spectrometry

scientific article

Immobilized monolithic enzyme reactors for application in proteomics and pharmaceutics

scientific article

Improved single-step enrichment methods of cross-linked products for protein structure analysis and protein interaction mapping

scientific article

Integrated Workflow for Structural Proteomics Studies Based on Cross-Linking/Mass Spectrometry with an MS/MS Cleavable Cross-Linker

scientific article

Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry

scientific article

Mapping cell envelope and periplasm protein interactions of Escherichia coli respiratory formate dehydrogenases by chemical cross-linking and mass spectrometry

scientific article

Mapping low-resolution three-dimensional protein structures using chemical cross-linking and Fourier transform ion-cyclotron resonance mass spectrometry

scientific article

Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry

scientific article published on 24 October 2005

Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry

scientific article

Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: direct demonstration of multiple binding modes

scientific article published in April 2004

Mass Spectrometric Identification of SARS-CoV-2 Proteins from Gargle Solution Samples of COVID-19 Patients

scientific article published on 20 April 2020

Mass spectrometric proteome analyses of synovial fluids and plasmas from patients suffering from rheumatoid arthritis and comparison to reactive arthritis or osteoarthritis.

scientific article

Mass spectrometry-based secretome analysis of non-small cell lung cancer cell lines

scientific article

Monitoring Conformational Changes in Peroxisome Proliferator-Activated Receptor α by a Genetically Encoded Photoamino Acid, Cross-Linking, and Mass Spectrometry ⬇️

scientific article published on May 17, 2013

Monitoring Solution Structures of Peroxisome Proliferator-Activated Receptor β/δ upon Ligand Binding

scientific article

Monolithic columns with immobilized monomeric avidin: preparation and application for affinity chromatography ⬇️

scientific article published on January 20, 2012

Monolithic media for applications in affinity chromatography ⬇️

scientific article published on July 27, 2011

Multidimensional nano-HPLC coupled with tandem mass spectrometry for analyzing biotinylated proteins

scientific article

Munc13-like skMLCK variants cannot mimic the unique calmodulin binding mode of Munc13 as evidenced by chemical cross-linking and mass spectrometry

scientific article (publication date: 2013)

Nonconserved Ca(2+)/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity

scientific article

Osmotic stress is accompanied by protein glycation in Arabidopsis thaliana

scientific article

Preparation of monolithic affinity media for nano-liquid chromatography applications

scientific article

Presynaptic Calmodulin targets: lessons from structural proteomics

scientific article

Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry

scientific article

Protein structure determination using a combination of cross-linking, mass spectrometry, and molecular modeling.

scientific article

Pyruvate formate-lyase interacts directly with the formate channel FocA to regulate formate translocation

scientific article

Recombinant Expression, in Vitro Refolding, and Biophysical Characterization of the Human Glucagon-like Peptide-1 Receptor ⬇️

scientific article published on September 14, 2010

Reliable identification of cross-linked products in protein interaction studies by 13C-labeled p-benzoylphenylalanine

scientific article

Selective selC-independent selenocysteine incorporation into formate dehydrogenases

scientific article

Separate elements within a single IQ-like motif in adenylyl cyclase type 8 impart ca2+/calmodulin binding and autoinhibition

scientific journal article

StavroX--a software for analyzing crosslinked products in protein interaction studies

scientific article

Structural Insights into Retinal Guanylylcyclase–GCAP-2 Interaction Determined by Cross-Linking and Mass Spectrometry ⬇️

scientific article published on June 8, 2012

Structural analysis of guanylyl cyclase-activating protein-2 (GCAP-2) homodimer by stable isotope-labeling, chemical cross-linking, and mass spectrometry

scientific article

Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry

scientific journal article

Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB.

scientific article

Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry

scientific article

The First MS-Cleavable, Photo-Thiol-Reactive Cross-Linker for Protein Structural Studies.

scientific article published on 20 April 2018

The First Zero-Length Mass Spectrometry-Cleavable Cross-Linker for Protein Structure Analysis.

scientific article

The Isotope-Labeled, MS-Cleavable Cross-Linker Disuccinimidyl Dibutyric Urea for Improved Cross-Linking/Mass Spectrometry Studies

scientific article published on 21 November 2019

The advancement of chemical cross-linking and mass spectrometry for structural proteomics: from single proteins to protein interaction networks

scientific article

The development of ergot alkaloids as drugs

scientific article

The respiratory molybdo-selenoprotein formate dehydrogenases of Escherichia coli have hydrogen: benzyl viologen oxidoreductase activity

scientific article

To Be or Not to Be? Five Guidelines to Avoid Misassignments in Cross-Linking/Mass Spectrometry

scientific article published on 19 July 2017

List of works by Andrea Sinz

A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions

A biuret-derived, MS-cleavable cross-linking reagent for protein structural analysis: A proof-of-principle study

A capillary monolithic trypsin reactor for efficient protein digestion in online and offline coupling to ESI and MALDI mass spectrometry

A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein-protein interactions

A novel disulfide pattern in laminin-type epidermal growth factor-like (LE) modules of laminin β1 and γ1 chains

A universal matrix‐assisted laser desorption/ionization cleavable cross‐linker for protein structure analysis ⬇️

Acidosis-Induced Changes in Proteome Patterns of the Prostate Cancer-Derived Tumor Cell Line AT-1.

An Integrated Mass Spectrometry Based Approach to Probe the Structure of the Full-Length Wild-Type Tetrameric p53 Tumor Suppressor

An innovative method to study target protein-drug interactions by mass spectrometry

Analysis of nidogen-1/laminin γ1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modes

Analyzing PPARα/Ligand Interactions by Chemical Cross-Linking and High-Resolution Mass Spectrometry ⬇️

Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis

Azide-Modified Membrane Lipids: Synthesis, Properties, and Reactivity

Carboxyl-Photo-Reactive MS-Cleavable Cross-Linkers: Unveiling a Hidden Aspect of Diazirine-Based Reagents

Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters

Chemical Cross-Linking and High-Resolution Mass Spectrometry to Study Protein–Drug Interactions ⬇️

Chemical cross-linking and FTICR mass spectrometry for protein structure characterization.

Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex

Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

Chemical cross-linking and native mass spectrometry: A fruitful combination for structural biology

Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.

Collision-induced dissociative chemical cross-linking reagent for protein structure characterization: applied Edman chemistry in the gas phase.

Combining affinity enrichment, cross-linking with photo-amino acids, and mass spectrometry for probing protein kinase D2 interactions

Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking

Cross-Linking/Mass Spectrometry for Studying Protein Structures and Protein-Protein Interactions: Where Are We Now and Where Should We Go From Here?

Daffodil flowers delay senescence in cut Iris flowers

Dissociation Behavior of a TEMPO-Active Ester Cross-Linker for Peptide Structure Analysis by Free Radical Initiated Peptide Sequencing (FRIPS) in Negative ESI-MS.

Dissociation behavior of a bifunctional tempo-active ester reagent for peptide structure analysis by free radical initiated peptide sequencing (FRIPS) mass spectrometry

Divide and conquer: cleavable cross-linkers to study protein conformation and protein-protein interactions

Efficient electron transfer from hydrogen to benzyl viologen by the [NiFe]-hydrogenases of Escherichia coli is dependent on the coexpression of the iron-sulfur cluster-containing small subunit

Expression and purification of the ligand-binding domain of peroxisome proliferator-activated receptor alpha (PPARalpha).

Extending the cross-linking/mass spectrometry strategy: Facile incorporation of photo-activatable amino acids into the model protein calmodulin in Escherichia coli cells

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies

Fragmentation behavior of a thiourea-based reagent for protein structure analysis by collision-induced dissociative chemical cross-linking

Global Proteomic Analysis of Advanced Glycation End Products in the Arabidopsis Proteome Provides Evidence for Age-related Glycation Hotspots

Heterobifunctional isotope-labeled amine-reactive photo-cross-linker for structural investigation of proteins by matrix-assisted laser desorption/ionization tandem time-of-flight and electrospray ionization LTQ-Orbitrap mass spectrometry

Immobilized monolithic enzyme reactors for application in proteomics and pharmaceutics

Improved single-step enrichment methods of cross-linked products for protein structure analysis and protein interaction mapping

Integrated Workflow for Structural Proteomics Studies Based on Cross-Linking/Mass Spectrometry with an MS/MS Cleavable Cross-Linker

Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry

Mapping cell envelope and periplasm protein interactions of Escherichia coli respiratory formate dehydrogenases by chemical cross-linking and mass spectrometry

Mapping low-resolution three-dimensional protein structures using chemical cross-linking and Fourier transform ion-cyclotron resonance mass spectrometry

Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry

Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry

Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: direct demonstration of multiple binding modes

Mass Spectrometric Identification of SARS-CoV-2 Proteins from Gargle Solution Samples of COVID-19 Patients

Mass spectrometric proteome analyses of synovial fluids and plasmas from patients suffering from rheumatoid arthritis and comparison to reactive arthritis or osteoarthritis.

Mass spectrometry-based secretome analysis of non-small cell lung cancer cell lines

Monitoring Conformational Changes in Peroxisome Proliferator-Activated Receptor α by a Genetically Encoded Photoamino Acid, Cross-Linking, and Mass Spectrometry ⬇️

Monitoring Solution Structures of Peroxisome Proliferator-Activated Receptor β/δ upon Ligand Binding

Monolithic columns with immobilized monomeric avidin: preparation and application for affinity chromatography ⬇️

Monolithic media for applications in affinity chromatography ⬇️

Multidimensional nano-HPLC coupled with tandem mass spectrometry for analyzing biotinylated proteins

Munc13-like skMLCK variants cannot mimic the unique calmodulin binding mode of Munc13 as evidenced by chemical cross-linking and mass spectrometry

Nonconserved Ca(2+)/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity

Osmotic stress is accompanied by protein glycation in Arabidopsis thaliana

Preparation of monolithic affinity media for nano-liquid chromatography applications

Presynaptic Calmodulin targets: lessons from structural proteomics

Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry

Protein structure determination using a combination of cross-linking, mass spectrometry, and molecular modeling.

Pyruvate formate-lyase interacts directly with the formate channel FocA to regulate formate translocation

Recombinant Expression, in Vitro Refolding, and Biophysical Characterization of the Human Glucagon-like Peptide-1 Receptor ⬇️

Reliable identification of cross-linked products in protein interaction studies by 13C-labeled p-benzoylphenylalanine

Selective selC-independent selenocysteine incorporation into formate dehydrogenases

Separate elements within a single IQ-like motif in adenylyl cyclase type 8 impart ca2+/calmodulin binding and autoinhibition

StavroX--a software for analyzing crosslinked products in protein interaction studies

Structural Insights into Retinal Guanylylcyclase–GCAP-2 Interaction Determined by Cross-Linking and Mass Spectrometry ⬇️

Structural analysis of guanylyl cyclase-activating protein-2 (GCAP-2) homodimer by stable isotope-labeling, chemical cross-linking, and mass spectrometry

Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry

Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB.

Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry

The First MS-Cleavable, Photo-Thiol-Reactive Cross-Linker for Protein Structural Studies.

The First Zero-Length Mass Spectrometry-Cleavable Cross-Linker for Protein Structure Analysis.

The Isotope-Labeled, MS-Cleavable Cross-Linker Disuccinimidyl Dibutyric Urea for Improved Cross-Linking/Mass Spectrometry Studies

The advancement of chemical cross-linking and mass spectrometry for structural proteomics: from single proteins to protein interaction networks

The development of ergot alkaloids as drugs

The respiratory molybdo-selenoprotein formate dehydrogenases of Escherichia coli have hydrogen: benzyl viologen oxidoreductase activity

To Be or Not to Be? Five Guidelines to Avoid Misassignments in Cross-Linking/Mass Spectrometry