List of works - Takehiko Itoh

A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum

scientific article published on 07 October 2021

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem

scientific article (publication date: 2012)

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands

scientific article

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

scientific article published on 9 March 2015

A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion

scientific article

ATP hydrolysis is required for relocating cohesin from sites occupied by its Scc2/4 loading complex.

scientific article published on 23 December 2010

Acute transcriptional up-regulation specific to osteoblasts/osteoclasts in medaka fish immediately after exposure to microgravity

scientific article published on 22 December 2016

An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil

scientific article

Bcl11b controls odorant receptor class choice in mice

scientific article published on 07 August 2019

Budding yeast Wpl1(Rad61)-Pds5 complex counteracts sister chromatid cohesion-establishing reaction

scientific article published on 5 March 2009

Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways

scientific article

Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes

scientific article published in 2023

Chromosome length influences replication-induced topological stress

scientific article published in Nature

Coelacanth genomes reveal signatures for evolutionary transition from water to land

scientific article (publication date: October 2013)

Cohesin relocation from sites of chromosomal loading to places of convergent transcription

scientific article published on 30 June 2004

Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway.

scientific article

Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation

scientific article

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

scientific article

Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA.

scientific article published on 15 September 2016

Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1

scientific article

Construction and analysis of a human-chimpanzee comparative clone map.

scientific article

Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks

scientific article published on 8 October 2009

Ctf4 coordinates the progression of helicase and DNA polymerase alpha.

scientific article

DNA sequence and analysis of human chromosome 18

scientific article

DROMPA: easy‐to‐handle peak calling and visualization software for the computational analysis and validation of ChIP‐seq data ⬇️

scientific article published on May 15, 2013

Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis

scientific article published in July 2014

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut

scientific article

Draft genome sequencing and comparative analysis of Aspergillus sojae NBRC4239. ⬇️

scientific article published on June 2011

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

scientific article

Erratum: Author Correction: Bcl11b controls odorant receptor class choice in mice

scientific article published on 12 September 2019

Evolutionary History of Sexual Differentiation Mechanism in Insects

scientific article published in 2022

Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan

scientific article published on 04 January 2017

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

scientific article

Genome sequence of the lager brewing yeast, an interspecies hybrid

scientific article

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

scientific article

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

scientific article published on 15 February 2007

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.

scientific article

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

scientific article

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation

scientific article published on 01 March 2021

Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis

scientific article published on February 2011

Human chromosome 11 DNA sequence and analysis including novel gene identification

scientific article

Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication

scientific article published in January 2003

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

scientific article

Identification of large ancient duplications associated with human gene deserts

scientific article

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Insights into the genomic evolution of insects from cricket genomes

scientific article published on 14 June 2021

Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast

scientific article

MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

scientific article

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization.

scientific article published on 04 January 2016

Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

scientific article published on 01 June 2020

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions

scientific article published on 12 April 2019

Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I.

scientific article

Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe

scientific article published on 16 October 2008

Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes

scientific article published on 13 May 2009

Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases

scientific article

Sensory-neuron subtype-specific transcriptional programs controlling dendrite morphogenesis: genome-wide analysis of Abrupt and Knot/Collier

scientific article published on 27 November 2013

The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy

scientific article

The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific

scientific article published on 08 December 2015

The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants

scientific article

The genomic basis of parasitism in the Strongyloides clade of nematodes

scientific article published in February 2016

The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19

scientific article published in 2021

The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing

scientific article

Transcriptional dysregulation in NIPBL and cohesin mutant human cells

scientific article

Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis

scientific article published on 27 September 2012

Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting.

scientific article

List of works by Takehiko Itoh

A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion

ATP hydrolysis is required for relocating cohesin from sites occupied by its Scc2/4 loading complex.

Acute transcriptional up-regulation specific to osteoblasts/osteoclasts in medaka fish immediately after exposure to microgravity

An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil

Bcl11b controls odorant receptor class choice in mice

Budding yeast Wpl1(Rad61)-Pds5 complex counteracts sister chromatid cohesion-establishing reaction

Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways

Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes

Chromosome length influences replication-induced topological stress

Coelacanth genomes reveal signatures for evolutionary transition from water to land

Cohesin relocation from sites of chromosomal loading to places of convergent transcription

Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway.

Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA.

Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1

Construction and analysis of a human-chimpanzee comparative clone map.

Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks

Ctf4 coordinates the progression of helicase and DNA polymerase alpha.

DNA sequence and analysis of human chromosome 18

DROMPA: easy‐to‐handle peak calling and visualization software for the computational analysis and validation of ChIP‐seq data ⬇️

Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut

Draft genome sequencing and comparative analysis of Aspergillus sojae NBRC4239. ⬇️

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

Erratum: Author Correction: Bcl11b controls odorant receptor class choice in mice

Evolutionary History of Sexual Differentiation Mechanism in Insects

Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Genome sequence of the lager brewing yeast, an interspecies hybrid

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation

Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis

Human chromosome 11 DNA sequence and analysis including novel gene identification

Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

Identification of large ancient duplications associated with human gene deserts

Initial sequencing and analysis of the human genome

Insights into the genomic evolution of insects from cricket genomes

Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast

MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization.

Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions

Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I.

Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe

Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes

Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases

Sensory-neuron subtype-specific transcriptional programs controlling dendrite morphogenesis: genome-wide analysis of Abrupt and Knot/Collier

The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy

The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific

The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants

The genomic basis of parasitism in the Strongyloides clade of nematodes

The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19

The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing

Transcriptional dysregulation in NIPBL and cohesin mutant human cells

Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis

Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting.