List of works - Cathal Seoighe

A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data.

scientific article

Allele-specific splicing effects on DKKL1 and ZNF419 transcripts in HeLa cells.

scientific article published on 5 November 2016

Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design

scientific article published on 24 April 2013

Consistency in large pharmacogenomic studies.

scientific article published in November 2016

DNA methylation haplotypes as cancer markers

scientific article published on 01 August 2018

Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells.

scientific article published on 26 January 2016

HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC

scientific article

History by the numbers?

article published in the Proceedings of the National Academy of Sciences of the United States of America

Human immunodeficiency virus-specific gamma interferon enzyme-linked immunospot assay responses targeting specific regions of the proteome during primary subtype C infection are poor predictors of the course of viremia and set point

scientific article published on 22 October 2008

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

scientific article (publication date: 27 May 2008)

Identification of broadly neutralizing antibody epitopes in the HIV-1 envelope glycoprotein using evolutionary models

scientific article

Impact of the Choice of Normalization Method on Molecular Cancer Class Discovery Using Nonnegative Matrix Factorization

scientific article

Incidence of HIV‐1 Dual Infection and Its Association with Increased Viral Load Set Point in a Cohort of HIV‐1 Subtype C–Infected Female Sex Workers

article

Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data

scientific article

Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data

scientific article published on 25 April 2019

Intron Length Coevolution across Mammalian Genomes

scientific article published on 22 August 2016

Response to Comment on "A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data".

scientific article published in May 2017

Selection Shapes Synonymous Stop Codon Use in Mammals

scientific article published on 02 July 2020

List of works by Cathal Seoighe

A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data.

Allele-specific splicing effects on DKKL1 and ZNF419 transcripts in HeLa cells.

Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design

Consistency in large pharmacogenomic studies.

DNA methylation haplotypes as cancer markers

Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells.

HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC

History by the numbers?

Human immunodeficiency virus-specific gamma interferon enzyme-linked immunospot assay responses targeting specific regions of the proteome during primary subtype C infection are poor predictors of the course of viremia and set point

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

Identification of broadly neutralizing antibody epitopes in the HIV-1 envelope glycoprotein using evolutionary models

Impact of the Choice of Normalization Method on Molecular Cancer Class Discovery Using Nonnegative Matrix Factorization

Incidence of HIV‐1 Dual Infection and Its Association with Increased Viral Load Set Point in a Cohort of HIV‐1 Subtype C–Infected Female Sex Workers

Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data

Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data

Intron Length Coevolution across Mammalian Genomes

Response to Comment on "A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data".

Selection Shapes Synonymous Stop Codon Use in Mammals