List of works - Sabeeha Merchant

A Novel Component of the Disulfide-Reducing Pathway Required for Cytochrome c Assembly in Plastids ⬇️

scientific article published on January 10, 2011

A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism

scientific article published on 12 June 2019

A bioactive peptide amidating enzyme is required for ciliogenesis

scientific article

A ferroxidase encoded by FOX1 contributes to iron assimilation under conditions of poor iron nutrition in Chlamydomonas

scientific article

A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts

scientific article

A pathogenic role for histone H3 copper reductase activity in a yeast model of Friedreich's ataxia

scientific article published on 17 December 2021

A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element

scientific article

A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii

scientific article

A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life

scientific article

A thylakoid membrane protein harboring a DnaJ-type zinc finger domain is required for photosystem I accumulation in plants

scientific article

Activation of Autophagy by Metals in Chlamydomonas reinhardtii

scientific article

Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus

scientific article

Algae as nutritional and functional food sources: revisiting our understanding

scientific article

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data

scientific article

An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas

scientific article published on 08 December 2020

Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide

scientific article

Between a rock and a hard place: trace element nutrition in Chlamydomonas

scientific article published on 26 April 2006

Bilin-dependent photoacclimation in Chlamydomonas reinhardtii

scientific article published on 30 October 2017

CCS5, a thioredoxin-like protein involved in the assembly of plastid c-type cytochromes

scientific article

Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies.

scientific article published on 25 August 2015

Chlamydomonas reinhardtii LFO1 Is an IsdG Family Heme Oxygenase

scientific article

Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production

scientific article

Copper response element and Crr1-dependent Ni(2+)-responsive promoter for induced, reversible gene expression in Chlamydomonas reinhardtii

scientific article

Copper response regulator1-dependent and -independent responses of the Chlamydomonas reinhardtii transcriptome to dark anoxia

scientific article published on 6 September 2013

Copper status of exposed microorganisms influences susceptibility to metallic nanoparticles

scientific article

Copper-dependent iron assimilation pathway in the model photosynthetic eukaryote Chlamydomonas reinhardtii

scientific article

Critical role of Chlamydomonas reinhardtii ferredoxin-5 in maintaining membrane structure and dark metabolism

scientific article

Cyc2p, a membrane-bound flavoprotein involved in the maturation of mitochondrial c-type cytochromes

scientific article

Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii

scientific article

Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

scientific article published on 8 October 2015

Early eukaryotic origins for cilia-associated bioactive peptide-amidating activity.

scientific article

Elemental economy: microbial strategies for optimizing growth in the face of nutrient limitation

scientific article

Endoplasmic reticulum-mitochondria junction is required for iron homeostasis

scientific article published on 21 June 2017

Enzymatic properties of the ferredoxin-dependent nitrite reductase from Chlamydomonas reinhardtii. Evidence for hydroxylamine as a late intermediate in ammonia production

scientific article

Essential histidine and tryptophan residues in CcsA, a system II polytopic cytochrome c biogenesis protein

scientific article published on 9 November 2002

Evaluation of oxygen response involving differential gene expression in Chlamydomonas reinhardtii

scientific article published in January 2004

Evolution of a plant-specific copper chaperone family for chloroplast copper homeostasis

scientific article

Exploiting algal NADPH oxidase for biophotovoltaic energy

scientific article

FEA1, FEA2, and FRE1, encoding two homologous secreted proteins and a candidate ferrireductase, are expressed coordinately with FOX1 and FTR1 in iron-deficient Chlamydomonas reinhardtii

scientific article

FER1 and FER2 encoding two ferritin complexes in Chlamydomonas reinhardtii chloroplasts are regulated by iron

scientific article published on May 2008

Fe Sparing and Fe Recycling Contribute to Increased Superoxide Dismutase Capacity in Iron-Starved Chlamydomonas reinhardtii ⬇️

scientific article published on June 8, 2012

Functional Modeling Identifies Paralogous Solanesyl-diphosphate Synthases That Assemble the Side Chain of Plastoquinone-9 in Plastids ⬇️

scientific article published on 02 August 2013

Functional analysis of a divergent system II protein, Ccs1, involved in c-type cytochrome biogenesis

scientific article published on 9 November 2002

Genetic dissection of nutritional copper signaling in chlamydomonas distinguishes regulatory and target genes

scientific article

Genetically Programmed Changes in Photosynthetic Cofactor Metabolism in Copper-deficient Chlamydomonas

scientific article published on 20 July 2016

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

scientific article

Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes

scientific article

High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation.

scientific article

High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild iso

scientific article

His protects heme as it crosses the membrane

scientific article published on 16 June 2009

Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae

scientific article

Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase

scientific article published on 5 March 2012

In situ architecture of the algal nuclear pore complex.

scientific article

Iron economy in Chlamydomonas reinhardtii

scientific article published on 02 September 2013

Iron sparing and recycling in a compartmentalized cell

scientific article published on 17 August 2013

Journal Impact: Brave New World.

scientific article published on 25 August 2017

Lysosome-related organelles as mediators of metal homeostasis

scientific article

Manganese deficiency in Chlamydomonas results in loss of photosystem II and MnSOD function, sensitivity to peroxides, and secondary phosphorus and iron deficiency

scientific article

Ni induces the CRR1-dependent regulon revealing overlap and distinction between hypoxia and Cu deficiency responses in Chlamydomonas reinhardtii

scientific article published on 12 May 2016

Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.

scientific article published on 18 April 2014

Novel metabolism in Chlamydomonas through the lens of genomics

scientific article published on 8 February 2007

Overlapping Specificities of the Mitochondrial Cytochrome c and c1 Heme Lyases ⬇️

scientific article published on September 26, 2003

Oxygen deficiency responsive gene expression in Chlamydomonas reinhardtii through a copper-sensing signal transduction pathway

scientific article published in February 2002

PGRL1 participates in iron-induced remodeling of the photosynthetic apparatus and in energy metabolism in Chlamydomonas reinhardtii

scientific article published on 25 September 2009

PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis.

scientific article published on 15 December 2014

POSTTRANSLATIONAL ASSEMBLY OF PHOTOSYNTHETIC METALLOPROTEINS.

scientific article

Pattern of expression and substrate specificity of chloroplast ferredoxins from Chlamydomonas reinhardtii

scientific article published on 07 July 2009

Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii

scientific article

Photo-oxidative stress impacts the expression of genes encoding iron metabolism components in Chlamydomonas

scientific article published in November 2008

Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation

scientific article

Precious metal economy

scientific article published on August 2006

Publisher Correction: An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonasis

scientific article published on 04 January 2021

RAF2 is a Rubisco Assembly Factor in Arabidopsis thaliana

scientific article published on 3 February 2018

RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

scientific article published on 8 November 2013

RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

scientific article published on 29 June 2010

Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation

scientific article

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

scientific article published on 29 June 2015

Regulating cellular trace metal economy in algae

scientific article published on 30 June 2017

Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga

scientific article published on 20 February 2019

Relationship between nucleosome positioning and DNA methylation

scientific article published on 30 May 2010

Remodeling of membrane lipids in iron-starved Chlamydomonas

scientific article published on 27 August 2013

Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival

scientific article

SINGLET OXYGEN RESISTANT 1 links reactive electrophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii

scientific article

Simple steps to enable reproducibility: culture conditions affecting <i>Chlamydomonas</i> growth and elemental composition

scientific article published in 2022

Sphingolipid Signaling Mediates Iron Toxicity ⬇️

scientific article published on July 3, 2012

Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage

scientific article published on 5 October 2012

Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps

scientific article published on 15 April 2011

Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant

scientific article published on 26 November 2013

TAG, You’re it! Chlamydomonas as a reference organism for understanding algal triacylglycerol accumulation ⬇️

scientific article published on December 29, 2011

Thank You, Editors and Reviewers of The Plant Cell

scientific article

The CRR1 nutritional copper sensor in Chlamydomonas contains two distinct metal-responsive domains

scientific article published on 3 December 2010

The Chlamydomonas genome project: a decade on.

scientific article

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage ⬇️

scientific article published on April 22, 2011

The Plant Cell Begins Opt-in Publishing of Peer Review Reports.

scientific article

The Plant Cell Celebrates 30 Years of Publishing the Best Work in Plant Biology

scientific article published in 2019

The Plant Cell Welcomes Assistant Features Editors.

scientific article published on 19 January 2018

The Plant CellIntroduces Breakthrough Reports: A New Forum for Cutting-Edge Plant Research

article

The histone H3-H4 tetramer is a copper reductase enzyme

scientific article

The ins and outs of algal metal transport

scientific article

The light reactions: a guide to recent acquisitions for the picture gallery

scientific article

The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii

scientific article

The plant cell in the new age of scientific publishing

scientific article published on 17 February 2015

The proteome of copper, iron, zinc, and manganese micronutrient deficiency in Chlamydomonas reinhardtii

scientific article published on 13 October 2012

The thylakoid membrane protein CGL160 supports CF1CF0 ATP synthase accumulation in Arabidopsis thaliana

scientific article published on 2 April 2015

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

The γ-carbonic anhydrase subcomplex of mitochondrial complex I is essential for development and important for photomorphogenesis of Arabidopsis

scientific article published on 18 September 2012

Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas

scientific article

Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis

scientific article published on 28 February 2012

Transcriptome-wide changes in Chlamydomonas reinhardtii gene expression regulated by carbon dioxide and the CO2-concentrating mechanism regulator CIA5/CCM1.

scientific article

Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis

scientific article

Two Chlamydomonas CTR copper transporters with a novel cys-met motif are localized to the plasma membrane and function in copper assimilation

scientific article

Xantha-l encodes a membrane subunit of the aerobic Mg-protoporphyrin IX monomethyl ester cyclase involved in chlorophyll biosynthesis

scientific article

Zinc Binding Drives Sheet Formation by the SAM Domain of Diacylglycerol Kinase δ ⬇️

scientific article published on November 9, 2010

Zinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamydomonas reinhardtii

scientific article published on 25 February 2013

List of works by Sabeeha Merchant

A Novel Component of the Disulfide-Reducing Pathway Required for Cytochrome c Assembly in Plastids ⬇️

A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism

A bioactive peptide amidating enzyme is required for ciliogenesis

A ferroxidase encoded by FOX1 contributes to iron assimilation under conditions of poor iron nutrition in Chlamydomonas

A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts

A pathogenic role for histone H3 copper reductase activity in a yeast model of Friedreich's ataxia

A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element

A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii

A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life

A thylakoid membrane protein harboring a DnaJ-type zinc finger domain is required for photosystem I accumulation in plants

Activation of Autophagy by Metals in Chlamydomonas reinhardtii

Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus

Algae as nutritional and functional food sources: revisiting our understanding

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data

An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas

Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide

Between a rock and a hard place: trace element nutrition in Chlamydomonas

Bilin-dependent photoacclimation in Chlamydomonas reinhardtii

CCS5, a thioredoxin-like protein involved in the assembly of plastid c-type cytochromes

Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies.

Chlamydomonas reinhardtii LFO1 Is an IsdG Family Heme Oxygenase

Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production

Copper response element and Crr1-dependent Ni(2+)-responsive promoter for induced, reversible gene expression in Chlamydomonas reinhardtii

Copper response regulator1-dependent and -independent responses of the Chlamydomonas reinhardtii transcriptome to dark anoxia

Copper status of exposed microorganisms influences susceptibility to metallic nanoparticles

Copper-dependent iron assimilation pathway in the model photosynthetic eukaryote Chlamydomonas reinhardtii

Critical role of Chlamydomonas reinhardtii ferredoxin-5 in maintaining membrane structure and dark metabolism

Cyc2p, a membrane-bound flavoprotein involved in the maturation of mitochondrial c-type cytochromes

Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii

Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

Early eukaryotic origins for cilia-associated bioactive peptide-amidating activity.

Elemental economy: microbial strategies for optimizing growth in the face of nutrient limitation

Endoplasmic reticulum-mitochondria junction is required for iron homeostasis

Enzymatic properties of the ferredoxin-dependent nitrite reductase from Chlamydomonas reinhardtii. Evidence for hydroxylamine as a late intermediate in ammonia production

Essential histidine and tryptophan residues in CcsA, a system II polytopic cytochrome c biogenesis protein

Evaluation of oxygen response involving differential gene expression in Chlamydomonas reinhardtii

Evolution of a plant-specific copper chaperone family for chloroplast copper homeostasis

Exploiting algal NADPH oxidase for biophotovoltaic energy

FEA1, FEA2, and FRE1, encoding two homologous secreted proteins and a candidate ferrireductase, are expressed coordinately with FOX1 and FTR1 in iron-deficient Chlamydomonas reinhardtii

FER1 and FER2 encoding two ferritin complexes in Chlamydomonas reinhardtii chloroplasts are regulated by iron

Fe Sparing and Fe Recycling Contribute to Increased Superoxide Dismutase Capacity in Iron-Starved Chlamydomonas reinhardtii ⬇️

Functional Modeling Identifies Paralogous Solanesyl-diphosphate Synthases That Assemble the Side Chain of Plastoquinone-9 in Plastids ⬇️

Functional analysis of a divergent system II protein, Ccs1, involved in c-type cytochrome biogenesis

Genetic dissection of nutritional copper signaling in chlamydomonas distinguishes regulatory and target genes

Genetically Programmed Changes in Photosynthetic Cofactor Metabolism in Copper-deficient Chlamydomonas

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes

High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation.

High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild iso

His protects heme as it crosses the membrane

Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae

Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase

In situ architecture of the algal nuclear pore complex.

Iron economy in Chlamydomonas reinhardtii

Iron sparing and recycling in a compartmentalized cell

Journal Impact: Brave New World.

Lysosome-related organelles as mediators of metal homeostasis

Manganese deficiency in Chlamydomonas results in loss of photosystem II and MnSOD function, sensitivity to peroxides, and secondary phosphorus and iron deficiency

Ni induces the CRR1-dependent regulon revealing overlap and distinction between hypoxia and Cu deficiency responses in Chlamydomonas reinhardtii

Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.

Novel metabolism in Chlamydomonas through the lens of genomics

Overlapping Specificities of the Mitochondrial Cytochrome c and c1 Heme Lyases ⬇️

Oxygen deficiency responsive gene expression in Chlamydomonas reinhardtii through a copper-sensing signal transduction pathway

PGRL1 participates in iron-induced remodeling of the photosynthetic apparatus and in energy metabolism in Chlamydomonas reinhardtii

PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis.

POSTTRANSLATIONAL ASSEMBLY OF PHOTOSYNTHETIC METALLOPROTEINS.

Pattern of expression and substrate specificity of chloroplast ferredoxins from Chlamydomonas reinhardtii

Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii

Photo-oxidative stress impacts the expression of genes encoding iron metabolism components in Chlamydomonas

Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation

Precious metal economy

Publisher Correction: An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonasis

RAF2 is a Rubisco Assembly Factor in Arabidopsis thaliana

RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Regulating cellular trace metal economy in algae

Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga