List of works - Sean Conlan

A framework for human microbiome research

scientific article

A metagenomic survey of microbes in honey bee colony collapse disorder

scientific article (publication date: 12 October 2007)

A milieu of regulatory elements in the epidermal differentiation complex syntenic block: implications for atopic dermatitis and psoriasis

scientific article

A new arenavirus in a cluster of fatal transplant-associated diseases

scientific article

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

scientific article

Adaptability and persistence of the emerging pathogen Bordetella petrii

scientific article

Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii.

scientific article published on 06 May 2009

Compartmentalized control of skin immunity by resident commensals

scientific article

Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci.

scientific article

Comprehensive viral oligonucleotide probe design using conserved protein regions

scientific article (publication date: 2008)

Detection and Whole-Genome Sequencing of Carbapenemase-Producing Aeromonas hydrophila Isolates from Routine Perirectal Surveillance Culture

scientific article published on 17 February 2016

Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray

scientific article

Draft Genome Sequence of a Klebsiella pneumoniae Carbapenemase-Positive Sequence Type 111 Pseudomonas aeruginosa Strain

scientific article published on 11 February 2016

Folding of a monomeric porin, OmpG, in detergent solution

scientific article

Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance

scientific article published on 6 February 2018

Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data

scientific article

Identification of GBV-D, a novel GB-like flavivirus from old world frugivorous bats (Pteropus giganteus) in Bangladesh

scientific article published in 2010

Moussa virus: A new member of the Rhabdoviridae family isolated from Culex decens mosquitoes in Côte d’Ivoire

scientific article

Newly discovered ebola virus associated with hemorrhagic fever outbreak in Uganda

scientific article published in November 2008

Nonparametric methods for the analysis of single-color pathogen microarrays

scientific article

Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases

scientific article (publication date: 2007)

Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy

scientific article published on 08 October 2019

Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.

scientific article published on 9 February 2016

Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes

scientific article published on November 2005

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

scientific article

Shifts in human skin and nares microbiota of healthy children and adults

scientific article published on 10 October 2012

Software to perform automated comparisons of pair-wise percent identities for microbial species

scientific article published on 01 May 2006

Species-level analysis of DNA sequence data from the NIH Human Microbiome Project

scientific article

Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

scientific article

Structure, function and diversity of the healthy human microbiome

scientific article

Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

scientific article

The Gibbs Centroid Sampler

scientific article published on 5 May 2007

Topographic diversity of fungal and bacterial communities in human skin

scientific article

Topographical and temporal diversity of the human skin microbiome

scientific article

Using the Gibbs Motif Sampler for Phylogenetic Footprinting

article

Whole-Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission

scientific article

List of works by Sean Conlan

A framework for human microbiome research

A metagenomic survey of microbes in honey bee colony collapse disorder

A milieu of regulatory elements in the epidermal differentiation complex syntenic block: implications for atopic dermatitis and psoriasis

A new arenavirus in a cluster of fatal transplant-associated diseases

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

Adaptability and persistence of the emerging pathogen Bordetella petrii

Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii.

Compartmentalized control of skin immunity by resident commensals

Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci.

Comprehensive viral oligonucleotide probe design using conserved protein regions

Detection and Whole-Genome Sequencing of Carbapenemase-Producing Aeromonas hydrophila Isolates from Routine Perirectal Surveillance Culture

Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray

Draft Genome Sequence of a Klebsiella pneumoniae Carbapenemase-Positive Sequence Type 111 Pseudomonas aeruginosa Strain

Folding of a monomeric porin, OmpG, in detergent solution

Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance

Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data

Identification of GBV-D, a novel GB-like flavivirus from old world frugivorous bats (Pteropus giganteus) in Bangladesh

Moussa virus: A new member of the Rhabdoviridae family isolated from Culex decens mosquitoes in Côte d’Ivoire

Newly discovered ebola virus associated with hemorrhagic fever outbreak in Uganda

Nonparametric methods for the analysis of single-color pathogen microarrays

Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases

Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy

Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.

Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

Shifts in human skin and nares microbiota of healthy children and adults

Software to perform automated comparisons of pair-wise percent identities for microbial species

Species-level analysis of DNA sequence data from the NIH Human Microbiome Project

Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

Structure, function and diversity of the healthy human microbiome

Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

The Gibbs Centroid Sampler

Topographic diversity of fungal and bacterial communities in human skin

Topographical and temporal diversity of the human skin microbiome

Using the Gibbs Motif Sampler for Phylogenetic Footprinting

Whole-Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission