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List of works by Astrid Gall

Accessing Livestock Resources in Ensembl

scientific article published on 28 April 2021

An elephantine viral problem.

scientific article

Bugs full of viruses

scientific article published on 13 April 2015

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection

scientific article

Coalescent inference using serially sampled, high-throughput sequencing data from intra-host HIV infection

article

Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing

scientific article published on 06 February 2014

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article published on 13 July 2017

Design and validation of a microarray for detection, hemagglutinin subtyping, and pathotyping of avian influenza viruses.

scientific article published on 03 December 2008

Disease progression despite protective HLA expression in an HIV-infected transmission pair

scientific article published on 30 June 2015

Disease-associated XMRV sequences are consistent with laboratory contamination

scientific article

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals

scientific article published in September 2015

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

article

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

scientific article published in January 2018

Economic high-throughput-identification of influenza A subtypes from clinical specimens with a DNA-oligonucleotide microarray in an outbreak situation

scientific article published on 17 October 2011

Ensembl 2018.

scientific article published on 16 November 2017

Ensembl 2019

scientific article published on 01 January 2019

Ensembl 2020

scientific article published on 01 January 2020

Ensembl 2021

scientific article published on 02 November 2020

Ensembl Genomes 2020-enabling non-vertebrate genomic research

scientific article published on 01 January 2020

Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis ⬇️

scientific article

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing

scientific article published on 4 August 2016

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

scientific article published on 28 December 2017

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences

scientific article published on 25 May 2017

Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines.

scientific article published on 7 October 2014

IVA: accurate de novo assembly of RNA virus genomes

scientific article

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

article

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

scientific article published on 23 November 2017

Persistence of rabbit haemorrhagic disease virus genome in vaccinated rabbits after experimental infection

scientific article published in October 2006

Persistence of viral RNA in rabbits which overcome an experimental RHDV infection detected by a highly sensitive multiplex real-time RT-PCR.

scientific article published on 12 October 2006

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

scientific article published on 01 January 2020

Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda

scientific article published on 14 January 2020

Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient

scientific article published on 16 January 2018

Rapid haemagglutinin subtyping and pathotyping of avian influenza viruses by a DNA microarray

scientific article published on 15 May 2009

Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters

scientific article published on 18 January 2013

Role of HIV-specific CD8(+) T cells in pediatric HIV cure strategies after widespread early viral escape.

scientific article published on 5 October 2017

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

scientific article

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study

scientific article published on 20 September 2013

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes

scientific article

Viral fossils.

scientific article published on 30 December 2015

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article

Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes.

scientific article published in January 2018

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