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List of works by Dimitrios Paraskevis

8th IAS Conference on HIV Pathogenesis, Treatment and Prevention (IAS 2015)

article

A Nationwide Study about the Dispersal Patterns of the Predominant HIV-1 Subtypes A1 and B in Greece: Inference of the Molecular Transmission Clusters

scientific article published on 19 October 2020

A contaminant-free assessment of Endogenous Retroviral RNA in human plasma

scientific article

A review of the impact of weather and climate variables to COVID-19: In the absence of public health measures high temperatures cannot probably mitigate outbreaks

scientific article published on 27 December 2020

An Innovative Study Design to Assess the Community Effect of Interventions to Mitigate HIV Epidemics Using Transmission-Chain Phylodynamics

article

Analysis of complex HIV-1 intersubtype recombinants using a Bayesian scanning method

article

Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using bayesian inference: implications for the origin of HIV-1.

scientific article published on 29 August 2003

Antibodies against SARS-CoV-2 among health care workers in a country with low burden of COVID-19

scientific article published on 03 December 2020

Appearance of a single amino acid insertion at position 33 in HIV type 1 protease under a lopinavir-containing regimen, associated with reduced protease inhibitor susceptibility

scientific article published on 13 May 2011

Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships

article

Big Events in Greece and HIV Infection Among People Who Inject Drugs

scientific article published on 27 February 2015

Cellular HIV-1 DNA levels in drug sensitive strains are equivalent to those in drug resistant strains in newly-diagnosed patients in Europe

scientific article

Characterization of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti).

scientific article

Clinical evaluation of an HIV-1 and HCV assay and demonstration of significant reduction of the HCV detection window before seroconversion

scientific article published on January 2004

Combined Analysis of the Prevalence of Drug-Resistant Hepatitis B Virus in Antiviral Therapy-Experienced Patients in Europe (CAPRE).

scientific article published on July 2015

Comments on “The distribution of HIV-1 recombination breakpoints” by Jun Fan, Matteo Negroni, David L. Robertson

article

Comparative evaluation of the QUANTIPLEX HIV-1 RNA 2.0 and 3.0 (bDNA) assays and the AMPLICOR HIV-1 MONITOR v1.5 test for the quantitation of human immunodeficiency virus type 1 RNA in plasma

scientific article published in January 2001

Comparative evaluation of the performance of the Abbott RealTime HIV-1 assay for measurement of HIV-1 plasma viral load on genetically diverse samples from Greece

scientific article

Dating the origin and dispersal of hepatitis B virus infection in humans and primates

scientific article

Dating the origin of hepatitis B virus reveals higher substitution rate and adaptation on the branch leading to F/H genotypes.

scientific article published on 26 July 2015

Design and baseline findings of a large-scale rapid response to an HIV outbreak in people who inject drugs in Athens, Greece: the ARISTOTLE programme.

scientific article published on 14 July 2015

Detailed molecular epidemiologic characterization of HIV-1 infection in Bulgaria reveals broad diversity and evolving phylodynamics

scientific article

Development and assessment of a multiplex real-time PCR assay for quantification of human immunodeficiency virus type 1 DNA.

scientific article published on 6 May 2009

Development and assessment of a novel real-time PCR assay for quantitation of HBV DNA

article

Development of a new ultra sensitive real-time PCR assay (ultra sensitive RTQ-PCR) for the quantification of HBV-DNA.

scientific article published on 12 March 2010

Dynamics of drug-resistant HIV-1 in plasma and peripheral blood cells in patients during and after enfuvirtide therapy.

scientific article published in September 2007

Earlier treatment initiation is associated with a decreased number of HIV-1 subtype A1 transmissions in Greece

scientific article published on 19 June 2020

Early hCG addition to rFSH for ovarian stimulation in IVF provides better results and the cDNA copies of the hCG receptor may be an indicator of successful stimulation.

scientific article published on 13 October 2009

Economic recession and emergence of an HIV-1 outbreak among drug injectors in Athens metropolitan area: a longitudinal study

scientific article (publication date: 2013)

Emergence of an NNRTI resistance mutation Y181C in an HIV-infected NNRTI-naive patient

scientific article published in March 2008

Enhanced HIV-1 surveillance using molecular epidemiology to study and monitor HIV-1 outbreaks among intravenous drug users (IDUs) in Athens and Bucharest

scientific article

Erratum to “Development and assessment of a novel real-time PCR assay for quantitation of HBV DNA”

article

European recommendations for the clinical use of HIV drug resistance testing: 2011 update

scientific article published on April 1, 2011

Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event

scientific article published on 29 January 2020

Genetic Features of HIV-1 Integrase Sub-Subtype A6 Predominant in Russia and Predicted Susceptibility to INSTIs

scientific article published on 31 July 2020

Genetic evolution of human immunodeficiency virus type 1 in two spouses responding successfully to highly active antiretroviral therapy

scientific article published in January 2003

Genetic variants in immunoregulatory genes and risk for childhood lymphomas.

scientific article

Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

scientific article published on 15 December 2014

HBV viremia in newborns of HBsAg(+) predominantly Caucasian HBeAg(−) mothers

scientific article published on 16 December 2010

HBV-DNA levels predict overall mortality in HIV/HBV coinfected individuals

scientific article published on 19 August 2015

HCV Phylogeography of the General Population and High-Risk Groups in Cyprus Identifies the Island as a Global Sink for and Source of Infection

scientific article published on 11 July 2019

HCV dispersal patterns among intravenous drug users (IDUs) in Athens metropolitan area

scientific article published on 6 October 2016

HIV epidemiology in Greece.

scientific article published on October 2008

HIV transmission patterns among The Netherlands, Suriname, and The Netherlands Antilles: a molecular epidemiological study

scientific article

HIV-1 genetic variants circulation in the North of Angola

article

HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

scientific article published on 14 January 2013

HIV‑1 molecular epidemiology in the Balkans: a melting pot for high genetic diversity.

scientific article published on January 2012

High prevalence of CRF02_AG and many minor resistance-related mutations at the protease gene among HIV-infected treatment-naive immigrants in Madrid

article

High prevalence of the UGT1A1*28 variant in HIV-infected individuals in Greece

article

Homelessness and Other Risk Factors for HIV Infection in the Current Outbreak Among Injection Drug Users in Athens, Greece

scientific article published in January 2015

Hyperbilirubinemia in atazanavir treated HIV-infected patients: the impact of the UGT1A1*28 allele

scientific article published on 20 June 2017

Identification of reverse transcriptase mutations associated with HIV-1 drug resistance mainly against non-nucleoside reverse transcriptase inhibitors in treatment-naive patients.

scientific article

Impact of HIV-1 Subtype on CD4 Count at HIV Seroconversion, Rate of Decline, and Viral Load Set Point in European Seroconverter Cohorts ⬇️

scientific article published on December 7, 2012

Impact of hepatitis B virus infection on the progression of AIDS and mortality in HIV-infected individuals: a cohort study and meta-analysis

scientific article published in June 2009

In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarity

scientific article published in October 2003

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

scientific article

Increasing Prevalence of HIV‐1 Subtype A in Greece: Estimating Epidemic History and Origin

article

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics

scientific article

Interpretable Operations Research for High-Stakes Decisions: Designing the Greek COVID-19 Testing System

scientific article published in 2022

Limited cross-border infections in patients newly diagnosed with HIV in Europe

scientific article published on 3 April 2013

Low-dose IFN-alpha monotherapy in treatment-naive individuals with HIV-1 infection: evidence of potent suppression of viral replication.

scientific article

MicroRNAs and HIV latency: a complex and promising relationship

scientific article published on July 1, 2012

Molecular Epidemiology Analysis of SARS-CoV-2 Strains Circulating in Romania during the First Months of the Pandemic

scientific article published on 14 August 2020

Molecular analysis of HIV-1 infected individuals in a network-based intervention (TRIP): Phylogenetics identify HIV-1 infected individuals with social links.

scientific article

Molecular analysis of the full-length genome of HIV type 1 subtype I: evidence of A/G/I recombination

scientific article published in May 1999

Molecular characterization of HIV-1 infection in Northwest Spain (2009-2013): Investigation of the subtype F outbreak.

scientific article published on 16 December 2014

Molecular characterization of a recombinant HIV type 1 isolate (A/G/E/?): unidentified regions may be derived from parental subtype E sequences

scientific article published in June 2000

Molecular characterization of occult hepatitis B cases in Greek blood donors.

scientific article

Molecular epidemiology of GB virus C/hepatitis G virus in Athens, Greece

scientific article published in July 2000

Molecular epidemiology of HIV-1 infection in Europe: An overview

scientific article

Molecular epidemiology of a hepatitis C virus outbreak in a haemodialysis unit. Multicentre Haemodialysis Cohort Study on Viral Hepatitis

scientific article published in May 1999

Molecular investigation of HIV-1 cross-group transmissions during an outbreak among people who inject drugs (2011-2014) in Athens, Greece.

scientific article published on 10 April 2018

Molecular tracing of the geographical origin of HIV-1 infection and patterns of epidemic spread among migrants who inject drugs in Athens.

scientific article published on 16 August 2017

Mutations associated with genotypic resistance to antiretroviral therapy in treatment naïve HIV-1 infected patients in Greece.

scientific article

National income inequality and declining GDP growth rates are associated with increases in HIV diagnoses among people who inject drugs in Europe: a panel data analysis

scientific article

Near Full-length Genomic Sequencing and Molecular Analysis of HIV-Infected Individuals in a Network-based Intervention (TRIP) in Athens, Greece: Evidence that Transmissions Occur More Frequently from those with High HIV-RNA

scientific article published on 01 January 2018

Network Characteristics of People Who Inject Drugs Within a New HIV Epidemic Following Austerity in Athens, Greece

scientific article published on August 2015

Network Research Experiences in New York and Eastern Europe: Lessons for the Southern US in Understanding HIV Transmission Dynamics.

scientific article published in June 2018

Outbreaks of SARS-CoV-2 in naturally infected mink farms: Impact, transmission dynamics, genetic patterns, and environmental contamination

scientific article published on 07 September 2021

Overview of HIV molecular epidemiology among people who inject drugs in Europe and Asia.

scientific article

Patterns of drug resistance among newly diagnosed HIV-1 infected patients in Greece during the last decade: the crucial role of transmission networks

scientific article published on 2 November 2014

Patterns of transmitted HIV drug resistance in Europe vary by risk group

scientific article (publication date: 2014)

Persistence of frequently transmitted drug-resistant HIV-1 variants can be explained by high viral replication capacity.

scientific article

Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention

scientific article published on 20 April 2020

Phylogenetic analysis of the full-length SARS-CoV sequences: evidence for phylogenetic discordance in three genomic regions.

scientific article published in November 2004

Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods

scientific article published in November 2004

Pockets of HIV Non-infection Within Highly-Infected Risk Networks in Athens, Greece

article

Prevalence of different HPV types and estimation of prognostic risk factors based on the linear array HPV genotyping test.

scientific article

Prevalence of drug resistance among HIV-1 treatment-naive patients in Greece during 2003-2015: Transmitted drug resistance is due to onward transmissions

scientific article published on 5 July 2017

Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management

scientific article published on 15 August 2005

Prevalence of resistance-associated mutations in newly diagnosed HIV-1 patients in Greece.

scientific article published on 8 April 2005

Prevalence patterns and genotypes of GB Virus C/hepatitis G virus among imprisoned intravenous drug users

scholarly article by Cleo G. Anastassopoulou published in November 1998

Prevalence patterns and genotypes of GB virus C/hepatitis G virus among imprisoned intravenous drug users

scientific article published on November 1998

Primary resistance to integrase strand-transfer inhibitors in Europe

scientific article published on 17 July 2015

Quantitative detection of the M204V hepatitis B virus minor variants by amplification refractory mutation system real-time PCR combined with molecular beacon technology

scientific article published on 24 June 2009

Re-analysis of 34 full-length HIV-1 intersubtype recombinant sequences

article

Re-analysis of a human hepatitis B virus (HBV) isolate from an East African wild born Pan troglodytes schweinfurthii: evidence for interspecies recombination between HBV infecting chimpanzee and human

scientific article published in April 2005

Reanalysis of the HIV-1 Circulating Recombinant Form A/E (CRF01_AE): Evidence of A/E/G Recombination

article

Recent HIV-1 Outbreak Among Intravenous Drug Users in Romania: Evidence for Cocirculation of CRF14_BG and Subtype F1 Strains.

scientific article published on 4 November 2014

Renal transplantation from hepatitis B surface antigen (HBsAg)-positive donors to HBsAg-negative recipients: a case of post-transplant fulminant hepatitis associated with an extensively mutated hepatitis B virus strain and review of the current lite

scientific article published on 17 June 2013

Role of genetic polymorphisms in the progression of liver fibrosis in chronic hepatitis C virus infection

scientific article published in July 2008

Seroprevalence of Antibodies against SARS-CoV-2 among the Personnel and Students of the National and Kapodistrian University of Athens, Greece: A Preliminary Report

scientific article published on 21 September 2020

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference

scientific article published on 16 November 2004

Socially-integrated transdisciplinary HIV prevention.

scientific article published on October 2014

Spatiotemporal Distribution and Genetic Characterization of Measles Strains Circulating in Greece during the 2017-2018 Outbreak

scientific article published on 15 October 2020

Subgenotype A1 of HBV--tracing human migrations in and out of Africa

scientific article published on 21 June 2013

Successful virological outcome in an HIV-infected individual with a three-class resistant variant and an insertion in the protease genome with a Tipranavir based regimen

scientific article

The Calculated Genetic Barrier for Antiretroviral Drug Resistance Substitutions Is Largely Similar for Different HIV-1 Subtypes

article

The application of HIV molecular epidemiology to public health

scientific article published on 13 June 2016

The global spread of HIV-1 subtype B epidemic

scientific article

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis

scientific article

The interferon receptor-1 promoter polymorphisms affect the outcome of Caucasians with HBeAg-negative chronic HBV infection.

scientific article published on 2 May 2015

The phylogenetic information profile of HIV-1 and the degradation effect of recombination

article

The role of HIV-1 DNA as an additional marker of HIV-1 infection

scientific article published on May 2009

Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach

scientific article published on 20 May 2009

Transmission Dynamics of HIV-1 Drug Resistance among Treatment-Naïve Individuals in Greece: The Added Value of Molecular Epidemiology to Public Health

scientific article published on 13 November 2017

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

scientific article published on 29 November 2015

Transmission of drug-resistant HIV-1 is stabilizing in Europe

scientific article published in November 2009

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

scientific article

Trends in virological and clinical outcomes in individuals with HIV-1 infection and virological failure of drugs from three antiretroviral drug classes: a cohort study

scientific article published on 9 October 2011

Triple-class virologic failure in HIV-infected patients undergoing antiretroviral therapy for up to 10 years

scientific article published in March 2010

Ultrasensitive amplification refractory mutation system real-time PCR (ARMS RT-PCR) assay for detection of minority hepatitis B virus-resistant strains in the era of personalized medicine

scientific article published on 26 June 2013

Unravelling the history of hepatitis B virus genotypes A and D infection using a full-genome phylogenetic and phylogeographic approach

scientific article published on 07 August 2018

Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients

scientific article published on 15 May 2020

Web Service-Enabled Grid-Based Platform for Drug Resistance Management

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