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List of works by Louis Bernatchez

'Good genes as heterozygosity': the major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar)

article

60 specific eDNA qPCR assays to detect invasive, threatened, and exploited freshwater vertebrates and invertebrates in Eastern Canada

scientific article published on 28 May 2020

<scp>eDNA</scp> metabarcoding as a means to track distributions of different fish species in a protected area

scientific article published in January 2024

A Supergene in Seaweed Flies Modulates Male Traits and Female Perception

scientific article published in 2021

A climate-associated multispecies cryptic cline in the northwest Atlantic.

scientific article published on 28 March 2018

A comparative mitogenomic analysis of the potential adaptive value of Arctic charr mtDNA introgression in brook charr populations (Salvelinus fontinalis Mitchill).

scientific article published on November 2002

A fast, highly sensitive double-nested PCR-based method to screen fish immunobiomes

scientific article

A melting pot in the Arctic: Analysis of mitogenome variation in Arctic char ( Salvelinus alpinus ) reveals a 1000‐km contact zone between highly divergent lineages

scientific article published in 2021

A mtDNA analysis of spatiotemporal distribution of two sympatric larval populations of rainbow smelt (<i>Osmerus mordax</i>) in the St. Lawrence River estuary, Quebec, Canada

scientific article published on 24 April 2011

A multi-level biological approach to evaluate impacts of a major municipal effluent in wild St. Lawrence River yellow perch ( Perca flavescens )

scientific article published on 17 August 2014

A road map for molecular ecology

scientific article published on May 2013

AFLP utility for population assignment studies: analytical investigation and empirical comparison with microsatellites

scientific article published on 01 July 2003

ALLOPATRIC ORIGIN OF SYMPATRIC POPULATIONS OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS) AS REVEALED BY MITOCHONDRIAL-DNA RESTRICTION ANALYSIS.

scientific article

Absence of founder effect and evidence for adaptive divergence in a recently introduced insular population of white-tailed deer (Odocoileus virginianus)

scientific article published on 20 December 2019

Adaptation and acclimation of aerobic exercise physiology in Lake Whitefish ecotypes (Coregonus clupeaformis).

scientific article published on 15 July 2015

Adaptation and acclimation of traits associated with swimming capacity in Lake Whitefish (coregonus clupeaformis) ecotypes

scientific article

Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions

scientific article published on 09 July 2020

Adaptive and maladaptive genetic diversity in small populations: Insights from the Brook Charr (<i>Salvelinus fontinalis</i>) case study

scientific article published in 2020

Adaptive divergence between freshwater and marine sticklebacks: insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression

scientific article published on 6 November 2009

Adaptive migratory divergence among sympatric brook charr populations

scientific article published on 01 March 2005

All roads lead to home: panmixia of European eel in the Sargasso Sea.

scientific article

Alternative developmental pathways and the propensity to migrate: a case study in the Atlantic salmon

scientific article published on November 2, 2010

Alternative life histories in the Atlantic salmon: genetic covariances within the sneaker sexual tactic in males

scientific article published on 22 December 2010

Alternative male life-history tactics as potential vehicles for speeding introgression of farm salmon traits into wild populations

scientific article published in 2003

Alternative reproductive tactics increase effective population size and decrease inbreeding in wild Atlantic salmon

scientific article

An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): Implications for supportive breeding programs

Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum

scientific article published on 08 September 2011

Aquatic Landscape Genomics and Environmental Effects on Genetic Variation

scientific article published on 20 March 2019

Associative Overdominance and Negative Epistasis Shape Genome-Wide Ancestry Landscape in Supplemented Fish Populations

scientific article published on 04 April 2021

Asymmetric oceanographic processes mediate connectivity and population genetic structure, as revealed by RADseq, in a highly dispersive marine invertebrate (Parastichopus californicus).

scientific article published on 14 April 2018

Author Correction: Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys

scientific article published on 30 October 2019

BAC library construction, screening and clone sequencing of lake whitefish (Coregonus clupeaformis, Salmonidae) towards the elucidation of adaptive species divergence

scientific article

Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly

scientific article published on 03 February 2020

Behavioural and Growth Responses of a Territorial Fish (Atlantic Salmon, Salmo salar, L.) to Multiple Predatory Cues

article

Beyond species detection<b>—</b>leveraging environmental DNA and environmental RNA to push beyond presence/absence applications

scientific article published in 2023

Biogeographic insights from a genomic survey of Salmo trouts from the Aralo-Caspian regions

scientific article published in 2022

CORRELATED TROPHIC SPECIALIZATION AND GENETIC DIVERGENCE IN SYMPATRIC LAKE WHITEFISH ECOTYPES (COREGONUS CLUPEAFORMIS): SUPPORT FOR THE ECOLOGICAL SPECIATION HYPOTHESIS.

scientific article published on October 1999

Caged fish experiment and hydrodynamic bidimensional modeling highlight the importance to consider 2D dispersion in fluvial environmental DNA studies

scientific article published in 2020

Candidate genes and adaptive radiation: insights from transcriptional adaptation to the limnetic niche among coregonine fishes (Coregonus spp., Salmonidae).

scientific article published on 16 October 2008

Canonical correspondence analysis for estimating spatial and environmental effects on microsatellite gene diversity in brook charr (Salvelinus fontinalis)

scientific article published in 1999

Characterization of natural variation in North American Atlantic Salmon populations (Salmonidae: Salmo salar) at a locus with a major effect on sea age.

scientific article published on 17 June 2017

Chemosensory mediated behaviors and gene transcription profiles in wild yellow perch (Perca flavescens) from metal contaminated lakes

scientific article published on 21 May 2014

Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

scientific article published on 21 December 2018

Clinal variation in MHC diversity with temperature: evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon

scientific article

Coding Gene SNP Mapping Reveals QTL Linked to Growth and Stress Response in Brook Charr (Salvelinus fontinalis).

scientific article

Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis

scientific article published on March 2012

Combined effects of temperature changes and metal contamination at different levels of biological organization in yellow perch.

scientific article

Combining next-generation sequencing and online databases for microsatellite development in non-model organisms

scientific article published on 03 December 2013

Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin

scientific article published on 30 January 2019

Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).

scientific article published in December 2015

Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar) ⬇️

scientific article published on October 1, 2001

Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems

scientific article published on September 2007

Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels

scientific article

Comparing Pool-seq, Rapture, and GBS genotyping for inferring weak population structure: The American lobster (Homarus americanus) as a case study

scientific article published on 26 May 2019

Comparing eDNA metabarcoding and species collection for documenting Arctic metazoan biodiversity

scientific article published on 18 October 2019

Comparing genomic signatures of domestication in two Atlantic salmon ( L.) populations with different geographical origins

Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada

scientific article published on 11 October 2018

Consequences of unequal population size, asymmetric gene flow and sex-biased dispersal on population structure in brook charr (Salvelinus fontinalis).

scientific article published in January 2004

Conservation genetics of the threatened horned grebe (Podiceps auritus L.) population of the Magdalen Islands, Québec

scientific article published on 21 October 2005

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

scientific article

Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

scientific article published on 28 September 2020

Convergence in organ size but not energy metabolism enzyme activities among wild Lake Whitefish (Coregonus clupeaformis) species pairs

scientific article published on 23 September 2016

Convergent transcriptomic landscapes under polygenic selection accompany inter-continental parallel evolution within a Nearctic Coregonus (Salmonidae) sister-species complex

Copy number variants outperform SNPs to reveal genotype-temperature association in a marine species

scientific article published on 17 August 2020

Correlated Trophic Specialization and Genetic Divergence in Sympatric Lake Whitefish Ecotypes (Coregonus clupeaformis): Support for the Ecological Speciation Hypothesis

scientific article published on 05 May 2006

DIFFERENTIAL REPRODUCTIVE SUCCESS AND HERITABILITY OF ALTERNATIVE REPRODUCTIVE TACTICS IN WILD ATLANTIC SALMON (SALMO SALAR L.)

scientific article published on 01 May 2003

DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts

scientific article published on 22 October 2009

DNA barcoding of eight North American coregonine species

scientific article published on 15 September 2008

DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species

scientific article published on 16 October 2019

De novo transcriptome assembly and annotation for the desert rainbowfish (Melanotaenia splendida tatei) with comparison with candidate genes for future climates

scientific article

Decline of North Atlantic eels: a fatal synergy? ⬇️

scientific article published on April 7, 2003

Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review

scientific article published on 26 September 2018

Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

scientific article published on 26 August 2020

Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan

scientific article published on 10 June 2014

Detecting the exposure to Cd and PCBs by means of a non-invasive transcriptomic approach in laboratory and wild contaminated European eels (Anguilla anguilla)

scientific article published on 14 November 2015

Dietary sodium protects fish against copper-induced olfactory impairment.

scientific article published on 22 January 2015

Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments

scientific article published on 23 April 2012

Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea.

scientific article published on December 2011

Disturbance of social hierarchy by an invasive species: a gene transcription study ⬇️

scientific article

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation

scientific article

Divergence in physiological factors affecting swimming performance between anadromous and resident populations of brook charr Salvelinus fontinalis.

scientific article

Divergent selection maintains adaptive differentiation despite high gene flow between sympatric rainbow smelt ecotypes (Osmerus mordax Mitchill)

scientific article published on 01 February 2003

Diversity and evolution of MHII beta genes in a non-model percid species -- the Eurasian perch (Perca fluviatilis L.).

scientific article

Do North Atlantic eels show parallel patterns of spatially varying selection?

scientific article

Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies?

scientific article

Do genetic drift and accumulation of deleterious mutations preclude adaptation? Empirical investigation using RADseq in a northern lacustrine fish

scientific article published on 12 October 2017

Does catch and release affect the mating system and individual reproductive success of wild Atlantic salmon (Salmo salar L.)?

scientific article published on 19 November 2012

Does interspecific competition influence relationships between heterozygosity and fitness-related behaviors in juvenile Atlantic salmon (Salmo salar)?

article

Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper

academic article published on January 2019

Draft genome of the American Eel (Anguilla rostrata).

scientific article published on 18 October 2016

Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)

article

Eco-Evolutionary Genomics of Chromosomal Inversions

scientific article published on 03 May 2018

Ecological determinants and temporal stability of the within-river population structure in Atlantic salmon (Salmo salar L.).

scientific article published in May 2000

Editorial

Editorial: 2008 year in review

scientific article published on February 2009

Editorial: 2009 in review

scientific article

Effects of Rearing Environment and Strain Combination on Heterosis in Brook Trout

Effects of chronic metal exposure on wild fish populations revealed by high-throughput cDNA sequencing

scientific article published on 10 May 2011

Effects of genetic origin on phenotypic divergence in Brook Trout populations stocked with domestic fish

scientific article published on 14 May 2020

Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys.

scientific article published on 11 June 2018

Empirical assessment of software efficiency and accuracy to detect introgression under variable stocking scenarios in brook charr (Salvelinus fontinalis)

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities.

scientific article published on 16 September 2017

Environmental factors correlate with hybridization in stocked brook charr (Salvelinus fontinalis)

Epigenetic and Genetic Differentiation Between <i>Coregonus</i> Species Pairs

scientific article published on 25 January 2024

Epigenetic inheritance and reproductive mode in plants and animals

scientific article published in December 2021

Erratum: Phylogenic relationships among Palearctic and Nearctic whitefish (<i>Coregonus</i> sp.) populations as revealed by mtDNA variation

scientific article published on 21 April 2008

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

scientific article published on 6 March 2016

Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping-by-sequencing: Sex and time matter

scientific article published on 20 May 2020

Evidence for host effect on the intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids

scientific article published on 02 October 2019

Evidence for metabolic imbalance of vitamin A2 in wild fish chronically exposed to metals

scientific article published on 07 September 2012

Evolutionary Applications open to all

scientific article published on January 2012

Evolutionary applications summer 2011

scientific article

Evolutionary change driven by metal exposure as revealed by coding SNP genome scan in wild yellow perch (Perca flavescens).

scientific article published on 31 May 2013

Evolutionary change in human-altered environments

scientific article

Evolutionary ecotoxicology of wild yellow perch (Perca flavescens) populations chronically exposed to a polymetallic gradient

scientific article published on 12 October 2007

Extent and scale of local adaptation in salmonid fishes: review and meta-analysis

scientific article published on 12 January 2011

Fast transcriptional responses to domestication in the brook charr Salvelinus fontinalis

scientific article published on March 2010

Fine‐scale environmental heterogeneity shapes fluvial fish communities as revealed by eDNA metabarcoding

scientific article published on 20 August 2020

Fish community shifts along a strong fluvial environmental gradient revealed by eDNA metabarcoding

scientific article published on 02 June 2021

Fish out of water: Genomic insights into persistence of rainbowfish populations in the desert

scientific article published on 15 November 2021

Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling

scientific article published in 2012

Full length MHC IIβ exon 2 primers for salmonids: a new resource for next generation sequencing

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

scientific article published on 27 June 2017

GENETIC EVIDENCE FOR REPRODUCTIVE ISOLATION AND MULTIPLE ORIGINS OF SYMPATRIC TROPHIC ECOTYPES OF WHITEFISH (COREGONUS).

scientific article published on April 1996

Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish

scientific article

Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae).

scientific article published on 27 January 2009

Gene transcription profiling in wild and laboratory-exposed eels: Effect of captivity and in situ chronic exposure to pollution

scientific article published on 25 July 2016

Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes

scientific article published on 10 March 2004

Genetic and morphological support for possible sympatric origin of fish from subterranean habitats

scientific article published on 13 February 2018

Genetic and phenotypic changes in an Atlantic salmon population supplemented with non-local individuals: a longitudinal study over 21 years

scientific article published in March 2015

Genetic calibration of species diversity among North America's freshwater fishes

scientific article

Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome

scientific article published in January 2008

Genetic differentiation between two sympatric morphs of the blind Iran cave barb Iranocypris typhlops

scientific article

Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba

scientific article published on 19 July 2018

Genetic divergence among native trout Salmo trutta populations from southern Balkans based on mitochondrial DNA and microsatellite variation ⬇️

scientific article published on 01 December 2011

Genetic diversity in caribou linked to past and future climate change

scholarly article by Glenn Yannic et al published 15 December 2013 in Nature Climate Change

Genetic diversity of trout (genus Salmo) from its most eastern native range based on mitochondrial DNA and nuclear gene variation ⬇️

scientific article published on June 1, 1995

Genetic evidence for kin aggregation in the intertidal acorn barnacle (Semibalanus balanoides).

scientific article published on November 2006

Genetic population structure and variation at phenology‐related loci in anadromous Arctic char (Salvelinus alpinus)

scientific article published in 2019

Genetically based phenotype-environment association for swimming behavior in lake whitefish ecotypes (Coregonus clupeaformis Mitchill)

scientific article published on 01 November 2002

Genetically based population divergence in overwintering energy mobilization in brook charr (Salvelinus fontinalis).

scientific article published on 15 February 2013

Genome Compositional Organization in Gars Shows More Similarities to Mammals than to Other Ray-Finned Fish

scientific article

Genome-wide patterns of divergence during speciation: the lake whitefish case study

scientific article published on February 2012

Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon

scientific article published on 27 June 2006

Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation

scientific article published on 27 May 2021

Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. rostrata).

scientific article published on 22 September 2014

Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America

scientific article published on 6 March 2017

Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char

scientific article

Genomics for monitoring and understanding species responses to global climate change

scientific article published on 20 October 2023

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application

scientific article published on 2 December 2015

Geographic variation of multiple paternity in the American lobster, Homarus americanus

scientific article published on 01 April 2005

Glacial cycles as an allopatric speciation pump in north-eastern American freshwater fishes

scientific article

Go West: A One Way Stepping-Stone Dispersion Model for the Cavefish Lucifuga dentata in Western Cuba

scientific article

Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification

scientific article published on 01 March 2019

Gonadal transcriptome analysis of wild contaminated female European eels during artificial gonad maturation

scientific article published on 6 July 2015

Groundtruthing of pelagic forage fish detected by hydroacoustics in a whale feeding area using environmental DNA

scientific article published in 2020

Harnessing the Power of Genomics to Secure the Future of Seafood

scientific article

Heritability of life-history tactics and genetic correlation with body size in a natural population of brook charr (Salvelinus fontinalis).

scientific article published in November 2007

High genetic diversity and no inbreeding in the endangered copper redhorse, Moxostoma hubbsi (Catostomidae, Pisces): the positive sides of a long generation time

scientific article published on 01 June 2006

Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

scientific article published on 14 March 2018

How does exposure to nickel and cadmium affect the transcriptome of yellow perch (Perca flavescens)--results from a 1000 candidate-gene microarray

scientific article published on 13 September 2013

How does salinity influence habitat selection and growth in juvenile American eels Anguilla rostrata?

scientific article published on 21 January 2015

Identification of MHC class IIbeta resistance/susceptibility alleles to Aeromonas salmonicida in brook charr (Salvelinus fontinalis).

scientific article

Identifying Canadian freshwater fishes through DNA barcodes

scientific article

Identifying designatable units for intraspecific conservation prioritization: a hierarchical approach applied to the lake whitefish species complex (Coregonus spp.).

scientific article published on 9 February 2015

Impact of supplementation on deleterious mutation distribution in an exploited salmonid

scientific article published on 01 July 2018

Impacts of stocking and its intensity on effective population size in Brook Charr (Salvelinus fontinalis) populations

Implications for management and conservation of the population genetic structure of the wedge clam Donax trunculus across two biogeographic boundaries

scientific article

Improving herpetological surveys in eastern North America using the environmental DNA method

scientific article

In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata).

scientific article

In light of evolution: interdisciplinary challenges in food, health, and the environment.

scientific article

Incorporating putatively neutral and adaptive genomic data into marine conservation planning

scientific article published on 12 August 2020

Individual assignment test reveals differential restriction to dispersal between two salmonids despite no increase of genetic differences with distance.

scientific article

Inferring phylogenetic structure, hybridization and divergence times within Salmoninae (Teleostei: Salmonidae) using RAD-sequencing

scientific article published on 19 March 2018

Insights into the role of differential gene expression on the ecological adaptation of the snail Littorina saxatilis

scientific article

Integrating Traditional and Evolutionary Knowledge in Biodiversity Conservation: a Population Level Case Study

scientific article published in 2006

Integrating ecological and genetic structure to define management units for caribou in Eastern Canada

article

Integrative use of spatial, genetic, and demographic analyses for investigating genetic connectivity between migratory, montane, and sedentary caribou herds

scientific article published on 4 September 2007

Inter individual variations of the fish skin microbiota: host genetics basis of mutualism?

scientific article

Intercontinental karyotype-environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly.

scientific article published in June 2018

Interplay between ecological, behavioural and historical factors in shaping the genetic structure of sympatric walleye populations (Sander vitreus).

scientific article published in March 2007

Introgression and fixation of Arctic char (Salvelinus alpinus) mitochondrial genome in an allopatric population of brook trout (Salvelinus fontinalis)

Introgressive hybridization between wild and domestic individuals and its relationship with parasitism in brook charr Salvelinus fontinalis

scientific article published on 01 October 2018

Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses

scientific article published on 6 August 2016

Investigating the extent of parallelism in morphological and genomic divergence among lake trout ecotypes in Lake Superior

scientific article published on 18 January 2017

Isabelle Olivieri (1957–2016).

scientific article published on 25 December 2016

Lacustrine spatial distribution of landlocked Atlantic salmon populations assessed across generations by multilocus individual assignment and mixed‐stock analyses ⬇️

scientific article published on October 1, 2001

Landscape genetic analyses reveal cryptic population structure and putative selection gradients in a large-scale estuarine environment.

scientific article

Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation

scientific article published on 21 April 2008

Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation

scientific article published on 22 May 2013

Landscape variability explains spatial pattern of population structure of northern pike (Esox lucius) in a large fluvial system

scientific article published on 3 September 2014

Latitudinal variation in climate-associated genes imperils range edge populations

scientific article published on 15 September 2020

Life history and demographic determinants of effective/census size ratios as exemplified by brown trout (Salmo trutta).

scientific article

Linkage maps of the dwarf and Normal lake whitefish (Coregonus clupeaformis) species complex and their hybrids reveal the genetic architecture of population divergence

scientific article published on 16 November 2006

Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill).

scientific article published on 16 January 2013

Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms

scientific article

Local heterozygosity-fitness correlations with global positive effects on fitness in threespine stickleback

scientific article published on 01 August 2006

Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly

scientific article published on 23 August 2021

Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly

scientific article published on 28 December 2020

Long‐distance migration is a major factor driving local adaptation at continental scale in Coho salmon

scientific article published in 2022

Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Québec, Canada

scientific article

MHC adaptive divergence between closely related and sympatric African cichlids

scientific article

MHC standing genetic variation and pathogen resistance in wild Atlantic salmon

scientific article published on June 2009

MULTIPLE MODES OF SPECIATION INVOLVED IN THE PARALLEL EVOLUTION OF SYMPATRIC MORPHOTYPES OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS, SALMONIDAE).

scientific article published in February 1997

Major disruption of gene expression in hybrids between young sympatric anadromous and resident populations of brook charr (Salvelinus fontinalis Mitchill).

scientific article published on 22 June 2009

Making sense of the relationships between Ne, Nb and Nc towards defining conservation thresholds in Atlantic salmon (Salmo salar).

scientific article published on 17 August 2016

Mapping of Adaptive Traits Enabled by a High-Density Linkage Map for Lake Trout

scientific article published on 13 April 2020

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis).

scientific article

Mate choice for major histocompatibility complex genetic divergence as a bet-hedging strategy in the Atlantic salmon (Salmo salar)

scientific article published on 22 June 2011

Mating patterns and determinants of individual reproductive success in brown trout (Salmo trutta) revealed by parentage analysis of an entire stream living population

scientific article published in August 2010

Metabolic rate and climatic fluctuations shape continental wide pattern of genetic divergence and biodiversity in fishes

scientific article

Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis) using next-generation sequencing

scientific article

Migratory charr schools exhibit population and kin associations beyond juvenile stages

scientific article published on 01 September 2005

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).

scientific article

Mitochondrial DNA Variation among Anadromous Populations of Cisco (<i>Coregonus artedii</i>) as revealed by Restriction Analysis

scientific article published on 24 June 2008

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.).

scientific article published on 17 April 2012

Model-based demographic inference of introgression history in European whitefish species pairs'

scientific article published on 16 May 2019

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis).

scientific article

Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: evidence for cryptic allopatric diversity

scientific article

Monitoring and predicting the presence and abundance of juvenile Atlantic salmon in tributaries according to habitat characteristics using environmental <scp>DNA</scp>

scientific article published in May 2024

Multidisciplinary population monitoring when demographic data are sparse: a case study of remote trout populations

scientific article

Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time

scientific article

Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels

scientific article

Negative density-dependent dispersal in the American black bear (Ursus americanus) revealed by noninvasive sampling and genotyping

scientific article

Network analysis highlights complex interactions between pathogen, host and commensal microbiota

scientific article

Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis).

scientific article

New feature: themed sections ⬇️

scientific article published on April 1, 2013

Next-generation conservation genetics and biodiversity monitoring

article

Nonlinear effects of female mate choice in wild threespine sticklebacks

scientific article published on 01 November 2004

Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing

scientific article published on 20 June 2013

Null alleles are ubiquitous at microsatellite loci in the Wedge Clam (Donax trunculus)

scientific article

Oceanic spawning migration of the European eel (Anguilla anguilla).

scientific article published on September 2009

Offspring genetic diversity increases fitness of female Atlantic salmon (Salmo salar)

scientific article published in 2004

On the origin of species: insights from the ecological genomics of lake whitefish

scientific article

On the roles of landscape heterogeneity and environmental variation in determining population genomic structure in a dendritic system

scientific article published on 03 August 2018

Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

scientific article

Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method

article by Kristy Deiner et al published 2 November 2018 in Metabarcoding and Metagenomics

Oxidative phosphorylation gene transcription in whitefish species pairs reveals patterns of parallel and nonparallel physiological divergence ⬇️

scientific article published on July 25, 2012

PHYLOGEOGRAPHIC STRUCTURE IN MITOCHONDRIAL DNA OF THE LAKE WHITEFISH (COREGONUS CLUPEAFORMIS) AND ITS RELATION TO PLEISTOCENE GLACIATIONS.

scientific article published in June 1991

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

scientific article published in November 2013

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

scientific article published on 21 November 2017

Parallel evolution of ecomorphological traits in the European whitefish Coregonus lavaretus (L.) species complex during postglacial times

scientific article published in November 2006

Parallelism in the oxygen transport system of the lake whitefish: the role of physiological divergence in ecological speciation

scientific article published on 25 June 2012

Parental thermal environment controls the offspring phenotype in Brook charr (<i>Salvelinus fontinalis</i>): insights from a transcriptomic study

scientific article published on 13 March 2024

Pathway to Increase Standards and Competency of eDNA Surveys (PISCeS)—Advancing collaboration and standardization efforts in the field of eDNA

scientific article published on 22 June 2020

Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae)

scientific article published on 27 July 2008

Phenotype-environment association of the oxygen transport system in trimorphic European whitefish (Coregonus lavaretus) populations

scientific article

Phenotypic and phylogenetic correlates of geographic range size in Canadian freshwater fishes

article

Phylogenetic Relationships among Palearctic and Nearctic Whitefish (<i>Coregonus</i>sp.) Populations as Revealed by Mitochondrial DNA Variation

scientific article published on 06 May 2008

Phylogenetic relationships among the subfamily Coregoninae as revealed by mitochondrial DNA restriction analysis

scholarly article by Louis Bernatchez et al published December 1991 in Journal of Fish Biology

Phylogenetic status of brown trout Salmo trutta populations in five rivers from the southern Caspian Sea and two inland lake basins, Iran: a morphogenetic approach

scientific article published in October 2012

Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex

scientific article published on 26 September 2019

Population genetics of the American eel (Anguilla rostrata): FST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species

scientific article published on 5 December 2012

Population genomics and history of speciation reveal fishery management gaps in two related redfish species (<i>Sebastes mentella </i>and <i>Sebastes fasciatus</i>)

scientific article published on 14 December 2020

Population genomics of wild and laboratory zebrafish (Danio rerio)

scientific article (publication date: October 2011)

Population genomics, life‐history tactics, and mixed‐stock subsistence fisheries in the northernmost American Atlantic salmon populations

scientific article published in February 2024

Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish.

scientific article published in September 2014

Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon

scientific article published on 3 July 2009

Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures.

scientific article

Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis) by combining RAD sequencing and modeling of explanatory variables.

scientific article

Preference for nearshore and estuarine habitats in anadromous Arctic char (<i>Salvelinus alpinus</i>) from the Canadian high Arctic (Victoria Island, Nunavut) revealed by acoustic telemetry

scientific article published in 2016

Proper environmental DNA metabarcoding data transformation reveals temporal stability of fish communities in a dendritic river system

scientific article published in 2021

Putative causes and consequences of MHC variation within and between locally adapted stickleback demes.

scientific article

Putatively adaptive genetic variation in the giant California sea cucumber (Parastichopus californicus) as revealed by environmental association analysis of restriction-site associated DNA sequencing data

scientific article published on 10 December 2018

Quantifying relative fish abundance with eDNA: a promising tool for fisheries management

scientific article published on 18 December 2015

Quantitative genetic analysis of the physiological stress response in three strains of brook charr Salvelinus fontinalis and their hybrids

scientific article

Quantitative genetic parameters for wild stream-living brown trout: heritability and parental effects

scientific article published on 28 May 2010

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

scientific article published on 15 June 2015

RAD sequencing highlights polygenic discrimination of habitat ecotypes in the panmictic American eel.

scientific article published on 28 May 2015

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

scientific article published on 12 November 2015

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs

scientific article published on 21 May 2015

RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata).

scientific article

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species ⬇️

scientific article published on June 5, 2013

RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species

scientific article published on 6 February 2014

RNA/DNA ratios in American glass eels (Anguilla rostrata): evidence for latitudinal variation in physiological status and constraints to oceanic migration?

scientific article

Range-wide parallel climate-associated genomic clines in Atlantic salmon

scientific article published on 15 November 2017

Range-wide regional assignment of Atlantic salmon ( Salmo salar ) using genome wide single-nucleotide polymorphisms

article published in 2018

Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon

scientific article published on 01 January 2006

Recent advances in conservation and population genomics data analysis

Reduced fitness of Atlantic salmon released in the wild after one generation of captive breeding

scientific article published on 22 November 2012

Regional variation in energy storage strategies in American glass eels from Eastern Canada

scientific article published on 26 June 2015

Regional variation of gene regulation associated with storage lipid metabolism in American glass eels (Anguilla rostrata).

scientific article published on 24 February 2016

Regulatory versus coding signatures of natural selection in a candidate gene involved in the adaptive divergence of whitefish species pairs (Coregonus spp.) ⬇️

scientific article published on January 1, 2012

Reproductive isolation in a nascent species pair is associated with aneuploidy in hybrid offspring.

scientific article

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin ⬇️

scientific article published on 12 September 2019

Role of epibenthic resource opportunities in the parallel evolution of lake whitefish species pairs (Coregonus sp.) ⬇️

scientific article published on October 7, 2010

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.).

scientific article published on 9 December 2010

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

scientific article published on 12 September 2012

SPECIES FLOCK IN THE NORTH AMERICAN GREAT LAKES: MOLECULAR ECOLOGY OF LAKE NIPIGON CISCOES (TELEOSTEI: COREGONIDAE: COREGONUS).

scientific article published in December 1999

Salmonid Chromosome Evolution as Revealed by a Novel Method for Comparing RADseq Linkage Maps

scientific article

Seascape genomics of eastern oyster (Crassostrea virginica) along the Atlantic coast of Canada

scientific article published on 26 December 2018

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus).

scientific article

Selection effects on early life history traits and thermal resistance in brook charr <i>Salvelinus fontinalis</i>

scientific article published in May 2024

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

scientific article

Sex Chromosome Evolution, Heterochiasmy, and Physiological QTL in the Salmonid Brook Charr Salvelinus fontinalis.

scientific article published on 16 June 2017

Sex matters in massive parallel sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems.

scientific article

Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr

article

Shared ancestral polymorphism and chromosomal rearrangements as potential drivers of local adaptation in a marine fish

scientific article published on 04 June 2020

Shifting patterns in genetic control at the embryo-alevin boundary in brook charr

scientific article published in September 2004

Short-term genetic changes: evaluating effective population size estimates in a comprehensively described brown trout (Salmo trutta) population.

scientific article

Small-scale dispersal and population structure in stream-living brown trout (Salmo trutta) inferred by mark–recapture, pedigree reconstruction, and population genetics

article

Space invaders: Searching for invasive Smallmouth Bass (Micropterus dolomieu) in a renowned Atlantic Salmon (Salmo salar) river ⬇️

scientific article published on 15 February 2020

Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data

scientific article published on 02 January 2020

Speciation reversal in European whitefish (Coregonus lavaretus (L.)) caused by competitor invasion ⬇️

scientific article

Standing chromosomal variation in Lake Whitefish species pairs: the role of historical contingency and relevance for speciation

scientific article published on 22 August 2016

Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations

scientific article published on 23 October 2012

Strain specific genotype-environment interactions and evolutionary potential for body mass in brook charr (Salvelinus fontinalis).

scientific article published on March 2013

Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch)

scientific article published on 01 April 2022

Strong and consistent natural selection associated with armour reduction in sticklebacks.

scientific article published on 28 March 2011

Supplementation stocking of Lake Trout (Salvelinus namaycush) in small boreal lakes: Ecotypes influence on growth and condition

scientific article published on 12 July 2018

Surviving with low genetic diversity: the case of albatrosses

scientific article published on 01 March 2007

Sympatric morphotypes of the restricted-range Tashan Cave Garra: distinct species or a case of phenotypic plasticity?

scientific article published in 2022

Synergistic Integration of Genomics and Ecoevolutionary Dynamics for Sustainable Fisheries: A Reply to Kuparinen and Uusi-Heikkilä.

scientific article published on 26 December 2017

Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis).

scientific article published on 21 August 2013

Temperature and length-dependent modulation of the MH class II beta gene expression in brook charr (Salvelinus fontinalis) by a cis-acting minisatellite

scientific article published on 8 April 2010

Temporal variations in kidney metal concentrations and their implications for retinoid metabolism and oxidative stress response in wild yellow perch (Perca flavescens)

scientific article published on 09 June 2018

Temporally dynamic habitat suitability predicts genetic relatedness among caribou

scientific article published in October 2014

The American Lobster in a Changing Ecosystem: A US–Canada Science Symposium, 27–30 November 2012, Portland, Maine

scientific article published in November 2013

The Evolutionary Complexities of DNA Methylation in Animals: From Plasticity to Genetic Evolution

scientific article published in December 2023

The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes

scientific article

The contribution of newly established populations to the dynamics of range expansion in a one-dimensional fluvial-estuarine system: rainbow trout (Oncorhynchus mykiss) in Eastern Quebec

article

The demographic history of Atlantic salmon (Salmo salar) across its distribution range reconstructed from approximate Bayesian computations

scientific article published on 01 June 2018

The disruption of dominance hierarchies by a non-native species: an individual-based analysis

scientific article published on 8 March 2007

The effects of abiotic factors and intraspecific versus interspecific competition on the diel activity patterns of Atlantic salmon (Salmo salar) fry

article

The future of biodiversity monitoring and conservation utilizing environmental DNA

scientific article published in 2020

The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

scientific article published on 9 March 2013

The genetic consequences of spatially varying selection in the panmictic American eel (Anguilla rostrata).

scientific article

The genomic pool of standing structural variation outnumbers single nucleotide polymorphism by threefold in the marine teleost Chrysophrys auratus

scientific article published on 01 March 2019

The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr

scientific article

The influence of gene-environment interactions on GHR and IGF-1 expression and their association with growth in brook charr, Salvelinus fontinalis (Mitchill).

scientific article

The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill)

scientific article published on 9 January 2013

The landscape genetics of yellow perch (Perca flavescens) in a large fluvial ecosystem

scientific article published on 6 March 2008

The past, present and future of genomic scans for selection

scientific article

The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.).

scientific article published on 30 August 2008

The rise and fall of isolation by distance in the anadromous brook charr (Salvelinus fontinalis Mitchill)

scientific article

The rise and fall of the ancient northern pike master sex determining gene

scientific article published in June 2020

The role of recombination on genome-wide patterns of local ancestry exemplified by supplemented brook charr populations

scientific article published on 22 October 2019

The seabird paradox: dispersal, genetic structure and population dynamics in a highly mobile, but philopatric albatross species

scientific article published on 06 March 2008

The structural variation landscape in 492 Atlantic salmon genomes

scientific article published on 14 October 2020

The transcriptional landscape of cross-specific hybrids and its possible link with growth in brook charr (Salvelinus fontinalis Mitchill).

scientific article

The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.).

scientific article published on 26 February 2008

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing.

scientific article published on 19 November 2010

Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr (<i>Salvelinus fontinalis</i>)

scientific article published on 04 May 2022

Thirteen novel ideas and underutilised resources to support progress towards a range‐wide American eel stock assessment

scientific article published in 2022

This month in Evolutionary Applications

scientific article published on August 2008

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction-site associated DNA sequencing for the resolution of complex spatial structure

scientific article

Transcriptional and biochemical markers in transplanted Perca flavescens to characterize cadmium- and copper-induced oxidative stress in the field

scientific article published on 21 February 2015

Transcriptional response of yellow perch to changes in ambient metal concentrations-A reciprocal field transplantation experiment

scientific article published in February 2016

Transcriptional responses to environmental metal exposure in wild yellow perch (Perca flavescens) collected in lakes with differing environmental metal concentrations (Cd, Cu, Ni).

scientific article published on 29 April 2009

Transcriptome profile analysis reveals specific signatures of pollutants in Atlantic eels

scientific article published on 26 September 2014

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae).

scientific article

Transgenerational plasticity of dispersal‐related traits in a ciliate: genotype‐dependency and fitness consequences

scientific article published in 2022

Tug of war between continental gene flow and rearing site philopatry in a migratory bird: the sex-biased dispersal paradigm reconsidered

scientific article published on 21 January 2009

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.

scientific article

Uncovering endemism in a lake of invasive species introgression

scientific article published on 16 January 2021

Using Haplotype Information for Conservation Genomics

scientific article published on 03 December 2019

Variable extent of parallelism in respiratory, circulatory, and neurological traits across lake whitefish species pairs

scientific article published on 29 January 2013

Waterborne cadmium and nickel impact oxidative stress responses and retinoid metabolism in yellow perch

scientific article published on 28 May 2014

What is needed for next-generation ecological and evolutionary genomics?

scientific article published on 17 August 2012

eDNA metabarcoding as a means to assess distribution of subterranean fish communities: Iranian blind cave fishes as a case study

scientific article published in 2021

eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity

scientific article published on 13 July 2018

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