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List of works by Louis Bernatchez

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Identifying Canadian freshwater fishes through DNA barcodes

scientific article
Extent and scale of local adaptation in salmonid fishes: review and meta-analysis

scientific article published on 12 January 2011
On the origin of species: insights from the ecological genomics of lake whitefish

scientific article
The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

scientific article published on 9 March 2013
Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).

scientific article
Clinal variation in MHC diversity with temperature: evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon

scientific article published in September 2007
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

scientific article published on 12 September 2012
'Good genes as heterozygosity': the major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar)

article
Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar)

scientific article published on October 1, 2001
Parallel evolution of ecomorphological traits in the European whitefish Coregonus lavaretus (L.) species complex during postglacial times

scientific article published in November 2006
Genetic calibration of species diversity among North America's freshwater fishes

scientific article
Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling

scientific article published in 2012
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

scientific article published on 16 September 2017
RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

scientific article published on 15 June 2015
Oceanic spawning migration of the European eel (Anguilla anguilla).

scientific article published on September 2009
Adaptive divergence between freshwater and marine sticklebacks: insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression

scientific article published on 6 November 2009
Genome-wide patterns of divergence during speciation: the lake whitefish case study

scientific article published on February 2012
Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes

scientific article published on 10 March 2004
Evolutionary change in human-altered environments

scientific article
Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation

scientific article published on 21 April 2008
SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.).

scientific article published on 9 December 2010
The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.).

scientific article published on 26 February 2008
All roads lead to home: panmixia of European eel in the Sargasso Sea.

scientific article
Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish

scientific article
Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems

scientific article published on September 2007
Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae).

scientific article published on 27 January 2009
A road map for molecular ecology

scientific article published on May 2013
Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis).

scientific article
DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts

scientific article published on 22 October 2009
Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation

scientific article published on 22 May 2013
ALLOPATRIC ORIGIN OF SYMPATRIC POPULATIONS OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS) AS REVEALED BY MITOCHONDRIAL-DNA RESTRICTION ANALYSIS.

scientific article
RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species

scientific article published on 6 February 2014
Genome-wide single-generation signatures of local selection in the panmictic European eel.

scientific article
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

scientific article
RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

scientific article published on 12 November 2015
RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

scientific article published on June 5, 2013
Network analysis highlights complex interactions between pathogen, host and commensal microbiota

scientific article
Consequences of unequal population size, asymmetric gene flow and sex-biased dispersal on population structure in brook charr (Salvelinus fontinalis).

scientific article published in January 2004
MHC standing genetic variation and pathogen resistance in wild Atlantic salmon

scientific article published on June 2009
CORRELATED TROPHIC SPECIALIZATION AND GENETIC DIVERGENCE IN SYMPATRIC LAKE WHITEFISH ECOTYPES (COREGONUS CLUPEAFORMIS): SUPPORT FOR THE ECOLOGICAL SPECIATION HYPOTHESIS.

scientific article published on October 1999
MHC adaptive divergence between closely related and sympatric African cichlids

scientific article published on 15 August 2007
MULTIPLE MODES OF SPECIATION INVOLVED IN THE PARALLEL EVOLUTION OF SYMPATRIC MORPHOTYPES OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS, SALMONIDAE).

scientific article published in February 1997
The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.).

scientific article published on 30 August 2008
AFLP utility for population assignment studies: analytical investigation and empirical comparison with microsatellites

scientific article published on 01 July 2003
Ecological determinants and temporal stability of the within-river population structure in Atlantic salmon (Salmo salar L.).

scientific article published in May 2000
The genetic consequences of spatially varying selection in the panmictic American eel (Anguilla rostrata).

scientific article
Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time

scientific article
What is needed for next-generation ecological and evolutionary genomics?

scientific article published on 17 August 2012
A comparative mitogenomic analysis of the potential adaptive value of Arctic charr mtDNA introgression in brook charr populations (Salvelinus fontinalis Mitchill).

scientific article published on November 2002
Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon

scientific article published on 01 January 2006

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