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List of works by Fumio Inagaki

A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments

scientific article published on 23 June 2016

A New Method for Quality Control of Geological Cores by X-Ray Computed Tomography: Application in IODP Expedition 370

A comparative study of microbial diversity and community structure in marine sediments using poly(A) tailing and reverse transcription-PCR ⬇️

scientific article published on June 18, 2013

A new DNA extraction method by controlled alkaline treatments from consolidated subsurface sediments.

scientific article published on 23 November 2011

Abundance and distribution of Archaea in the subseafloor sedimentary biosphere

scientific article published on 16 August 2018

Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

article

Advancing subsurface biosphere and paleoclimate research: ECORD–ICDP–DCO–J-DESC–MagellanPlus Workshop Series Program Report

scientific article published in 2015

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment

scientific article published on 19 December 2017

Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years

scientific article published on 28 July 2020

An Improved Method for Extracting Viruses From Sediment: Detection of Far More Viruses in the Subseafloor Than Previously Reported

scientific article published on 29 April 2019

An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting.

scientific article published on 3 June 2013

Anaerobic methanotrophic community of a 5346-m-deep vesicomyid clam colony in the Japan Trench

scientific article

Analysis of Low-Biomass Microbial Communities in the Deep Biosphere.

scientific article published on 11 May 2016

Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes

scientific article

Archaeal MutS5 tightly binds to Holliday junction similarly to eukaryotic MutSγ.

scientific article

Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids

scientific article

Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment.

scientific article published on December 2001

Assessment of Capacity to Capture DNA Aerosols by Clean Filters for Molecular Biology Experiments.

scientific article

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes

scientific article

Bacterial dominance in subseafloor sediments characterized by methane hydrates.

scientific article

Bio-deposition of Amorphous Silica by an Extremely Thermophilic Bacterium, Thermus spp.

scientific article published in January 1998

Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin

scientific article (publication date: 21 February 2006)

Biological CO2 conversion to acetate in subsurface coal-sand formation using a high-pressure reactor system

scientific article (publication date: 2013)

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment

scientific article

Carbon and nitrogen assimilation in deep subseafloor microbial cells

scientific article (publication date: 8 November 2011)

Correction for Morono et al., Hot-Alkaline DNA Extraction Method for Deep-Subseafloor Archaeal Communities.

scientific article published in August 2014

Correction: Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes

scientific article published on 3 March 2017

Cross-species, amplifiable microsatellite markers for neoverrucid barnacles from deep-sea hydrothermal vents developed using next-generation sequencing

scientific article

Cultivable microbial community in 2-km-deep, 20-million-year-old subseafloor coalbeds through ~1000 days anaerobic bioreactor cultivation

scientific article published on 19 February 2019

D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin.

scientific article published on 15 May 2018

DEEP BIOSPHERE. Exploring deep microbial life in coal-bearing sediment down to ~2.5 km below the ocean floor.

scientific article

Data report: water activity of the deep coal-bearing basin off Shimokita from IODP Expedition 337

scientific article published on 22 March 2018

Deep Trek: Science of Subsurface Habitability & Life on Mars

scientific article published on 18 March 2021

Deep microbial proliferation at the basalt interface in 33.5-104 million-year-old oceanic crust

scientific article published on 02 April 2020

Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex.

scientific article published on 13 June 2018

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

scientific article published on 11 September 2009

Developing community-based scientific priorities and new drilling proposals in the southern Indian and southwestern Pacific oceans

scholarly article

Discovery of extremely REY-rich mud in the western North Pacific Ocean

Discriminative detection and enumeration of microbial life in marine subsurface sediments

scientific article

Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine ⬇️

scientific article published on May 13, 2003

Distribution of anaerobic carbon monoxide dehydrogenase genes in deep subseafloor sediments.

scientific article published on 03 March 2017

Distribution of archaea in a black smoker chimney structure

scientific article

Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.

scientific article published on 11 March 2013

Distributions of Microbial Activities in Deep Subseafloor Sediments

scientific article published in Science

Downsizing the Deep Biosphere

scientific article published in Science

Ecophysiology of Zetaproteobacteria Associated with Shallow Hydrothermal Iron-Oxyhydroxide Deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan

scientific article

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents

scientific article

Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria

scientific article

Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt

scientific article published in March 2013

Evolution of (Bio‐)Geochemical Processes and Diagenetic Alteration of Sediments Along the Tectonic Migration of Ocean Floor in the Shikoku Basin off Japan

Exploration of Subseafloor Life and the Biosphere Through IODP (2003–2013)

Exploration of cultivable fungal communities in deep coal-bearing sediments from ∼1.3 to 2.5 km below the ocean floor.

scientific article published on 28 December 2016

Geochemistry of REY-rich mud in the Japanese Exclusive Economic Zone around Minamitorishima Island

scholarly article by Koichiro Fujinaga et al published 2016 in Geochemical Journal

Global diversity of microbial communities in marine sediment

scientific article published on 19 October 2020

Gold-ISH: a nano-size gold particle-based phylogenetic identification compatible with NanoSIMS.

scientific article published in April 2014

High Fluid‐Pressure Patches Beneath the Décollement: A Potential Source of Slow Earthquakes in the Nankai Trough off Cape Muroto

scientific article published in 2021

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

scientific article published on 03 March 2014

Hot fluids, burial metamorphism and thermal histories in the underthrust sediments at IODP 370 site C0023, Nankai Accretionary Complex

Hot-alkaline DNA extraction method for deep-subseafloor archaeal communities

scientific article (publication date: March 2014)

IODP Expedition 337: Deep Coalbed Biosphere off Shimokita – Microbial processes and hydrocarbon system associated with deeply buried coalbed in the ocean

scientific article published in 2016

IODP New Ventures in Exploring Scientific Targets (INVEST): Defining the New Goals of an International Drilling Program

scientific article published in 2010

In-situ mechanical weakness of subducting sediments beneath a plate boundary décollement in the Nankai Trough

scientific article published in 2018

Increase in acetate concentrations during sediment sample onboard storage: a caution for pore-water geochemical analyses

scientific article

Intact preservation of environmental samples by freezing under an alternating magnetic field.

scientific article

Interactions between deformation and fluids in the frontal thrust region of the NanTroSEIZE transect offshore the Kii Peninsula, Japan: Results from IODP Expedition 316 Sites C0006 and C0007

article

Introduction to the Special Issue on Scientific Ocean Drilling: Looking to the Future

scientific article published in March 2019

Isolation and metabolic characteristics of previously uncultured members of the order aquificales in a subsurface gold mine

scientific article published in June 2002

Low frequency of endospore-specific genes in subseafloor sedimentary metagenomes

scientific article published on 23 January 2015

Low-Temperature Clay Mineral Dehydration Contributes to Porewater Dilution in Bering Sea Slope Subseafloor

Magnetic Mineral Diagenesis in a High Temperature and Deep Methanic Zone in Izu Rear Arc Marine Sediments, Northwest Pacific Ocean

scientific article

Metabolically active microbial communities in marine sediment under high-CO(2) and low-pH extremes

scientific article (publication date: March 2013)

Metal-ion-induced expression of gene fragments from subseafloor micro-organisms in the Kumano forearc basin, Nankai Trough

article

Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds

scientific article published on 3 October 2017

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

scientific article

Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered From Deep Hydrocarbon-Rich Shale

scientific article published on 12 March 2019

Microbial Sulfate Reduction Potential in Coal-Bearing Sediments Down to ~2.5 km below the Seafloor off Shimokita Peninsula, Japan

scientific article published on 05 October 2016

Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk.

scientific article

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system

scientific article published on 07 September 2006

Microbial community in black rust exposed to hot ridge flank crustal fluids

scientific article published on 21 August 2006

Microbial diversity in inactive chimney structures from deep-sea hydrothermal systems.

scientific article

Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial

scientific article published on 20 February 2019

Microbial silica deposition in geothermal hot waters.

scientific article

Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea.

scientific article published on 27 April 2006

Molecular quantification of environmental DNA using microfluidics and digital PCR.

scientific article published on 27 July 2012

Molecular signals from ancient materials: challenges to deep-biosphere and paleo-environmental research--a response to the comments of Sinninghe Damsté and Coolen.

scientific article published in April 2006

Naturally occurring, microbially induced smectite-to-illite reaction

scholarly article

Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the epsilon-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough.

scientific article

Origins of lithium in submarine mud volcano fluid in the Nankai accretionary wedge

scholarly article by Yoshiro Nishio et al published March 2015 in Earth and Planetary Science Letters

Pelolinea submarina gen. nov., sp. nov., an anaerobic, filamentous bacterium of the phylum Chloroflexi isolated from subseafloor sediment

scientific article

Phylogenetic Diversity of aprA Genes in Subseafloor Sediments on the Northwestern Pacific Margin off Japan.

scientific article

Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

scientific article published on 27 March 2008

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor

scientific article

Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments

article

Quo Vadis: Look to the Future

scientific article published in March 2019

Radical Gas-Based DNA Decontamination for Ultra-Sensitive Molecular Experiments ⬇️

scientific article published on April 18, 2012

Rapid metabolism fosters microbial survival in the deep, hot subseafloor biosphere

scholarly article

Saturated CO<sub>2</sub> inhibits microbial processes in CO<sub>2</sub>-vented deep-sea sediments

scientific article published in 2013

Scientific Drilling

scientific article published in 2013

Sedimentary membrane lipids recycled by deep-sea benthic archaea

Significant contribution of Archaea to extant biomass in marine subsurface sediments

scientific article

Significant contribution of subseafloor microparticles to the global manganese budget

scientific article published in Nature Communications

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems

scientific article published on April 2004

Spatial variations in microbial community composition in surface seawater from the ultra-oligotrophic center to rim of the South Pacific Gyre

scientific article

Stimulation of expression of a silica-induced protein (Sip) in Thermus thermophilus by supersaturated silicic acid

scientific article (publication date: April 2009)

Subseafloor Microbial Communities in Methane Hydrate-Bearing Sediment at Two Distinct Locations (ODP Leg204) in the Cascadia Margin ⬇️

scientific article published on January 1, 2008

Substrate-specific pressure-dependence of microbial sulfate reduction in deep-sea cold seep sediments of the Japan Trench

scientific article

Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans

scientific article published in August 2006

Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the  -Proteobacteria isolated from Okinawa Trough hydrothermal sediments

scientific article (publication date: September 2004)

Temperature limits to deep subseafloor life in the Nankai Trough subduction zone

scientific article

The next frontier for planetary and human exploration

scientific article published on 14 January 2019

Thermus thermophilus TMY isolated from silica scale taken from a geothermal power plant

scientific article published on 10 September 2007

Thiobacter subterraneus gen. nov., sp. nov., an obligately chemolithoautotrophic, thermophilic, sulfur-oxidizing bacterium from a subsurface hot aquifer.

scientific article

Thiofractor thiocaminus gen. nov., sp. nov., a novel hydrogen-oxidizing, sulfur-reducing epsilonproteobacterium isolated from a deep-sea hydrothermal vent chimney in the Nikko Seamount field of the northern Mariana Arc.

scientific article

Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the epsilon-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough.

scientific article

Ultramafics-Hydrothermalism-Hydrogenesis-HyperSLiME (UltraH3) linkage: a key insight into early microbial ecosystem in the Archean deep-sea hydrothermal systems

scholarly article by KEN TAKAI published in December 2006

Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars.

scientific article published on 21 July 2017

Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation

scientific article published on 01 September 2005

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins

scientific article published on 23 December 2013

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

scientific article published on 21 October 2015

Workshop report: Exploring deep oceanic crust off Hawai`i

scholarly article

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