List of works - Timothée Poisot

A comparative study of ecological specialization estimators

scientific article published in 2012

A conceptual framework for the evolution of ecological specialisation

scientific article

A continuum of specialists and generalists in empirical communities

scientific article

A continuum of specialists and generalists in empirical communities

A roadmap towards predicting species interaction networks (across space and time)

scientific article

An a posteriori measure of network modularity

scientific article

Analysing ecological networks of species interactions

scientific article published on 20 June 2018

Analyzing ecological networks of species interactions

Best publishing practices to improve user confidence in scientific software

scientific article published in 2015

Beyond species: why ecological interaction networks vary through space and time

article

BiMat : a MATLAB package to facilitate the analysis of bipartite networks

article

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

scholarly article published 26 May 2016

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

scientific article published on 02 October 2018

Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond

article published in 2015

Data Proliferation, Reconciliation, and Synthesis in Viral Ecology

scientific article published on 05 August 2021

Describe, understand and predict: why do we need networks in ecology?

article by Timothée Poisot et al published December 2016 in Functional Ecology

Dispersal and spatial heterogeneity allow coexistence between enemies and protective mutualists

scientific article

Ecogeographical rules and the macroecology of food webs

scientific article published on 20 May 2019

Ecological Data Should Not Be So Hard to Find and Reuse

scientific article published on 02 May 2019

Ecological Interactions and the Netflix Problem

Ecological interactions and the Netflix problem

scientific article

Evaluating ecological uniqueness over broad spatial extents using species distribution modelling

scientific article published on 8 March 2022

Evolutionary Ecology of Specialisation

Facultative and obligate parasite communities exhibit different network properties ⬇️

scientific article published on August 7, 2013

Functional Diversity: An Epistemic Roadmap

journal article from 'BioScience' published in 2019

Global knowledge gaps in species interaction networks data

scientific article

High-throughput sequencing: a roadmap toward community ecology

scientific article

Homogenization of species composition and species association networks are decoupled

article

Homogenization of species composition and species association networks are decoupled

Hosts, parasites and their interactions respond to different climatic variables

article published in 2017

Hosts, parasites, and their interactions respond to different climatic variables

How ecological networks evolve

Identifying a common backbone of interactions underlying food webs from different ecosystems.

scientific article published on 4 July 2018

Inferring food web structure from predator-prey body size relationships

scholarly article by Dominique Gravel et al published 2 September 2013 in Methods in Ecology and Evolution

Inferring predator–prey interactions in food webs

scientific article published on 11 December 2018

Interactions between immunocompetence, somatic condition and parasitism in the chubLeuciscus cephalusin early spring

article

Interactions retain the co-phylogenetic matching that communities lost

scholarly article published 26 November 2015

Key Questions for Next-Generation Biomonitoring

scientific article published on 08 January 2020

Lack of quantitative training among early-career ecologists: a survey of the problem and potential solutions

scientific article

Leveraging pathogen community distributions to understand outbreak and emergence potential

Linear filtering reveals false negatives in species interaction data

scientific article

Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age

scientific article published on 21 March 2018

Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in Julia

scientific article published on 05 May 2021

Mangal: An open infrastructure for ecological interactions

scientific article published in 2019

Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web

scientific article published in 2023

Morphological and molecular evolution are not linked in Lamellodiscus (Plathyhelminthes, Monogenea)

scientific article (publication date: 2011)

Moving toward a sustainable ecological science: don't let data go to waste!

scientific article published in 2013

Network structure and local adaptation in co-evolving bacteria-phage interactions

scientific article published on 16 January 2017

Open Letter to The American Association for the Advancement of Science

Open Science Isn't Always Open to All Scientists ⬇️

journal article from 'American Scientist' published in 2019

Open letter to the Society for Neuroscience

Optimal transportation theory for species interaction networks ⬇️

journal article from 'Ecology and Evolution' published in 2021

Phage-bacteria infection networks

scientific article published on 14 December 2012

Refocusing multiple stressor research around the targets and scales of ecological impacts ⬇️

journal article from 'Nature Ecology & Evolution' published in 2021

Resource availability affects the structure of a natural bacteria-bacteriophage community

scientific article published on 20 October 2010

Revealing biases in the sampling of ecological interaction networks

scientific article published on 02 September 2019

Revisiting the Links-Species Scaling Relationship in Food Webs

scientific article published on 29 July 2020

SVD entropy reveals the high complexity of ecological networks

SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia

scientific article published on 27 January 2021

Simulations of biomass dynamics in community food webs

scientific article published in 2017

Simulations of biomass dynamics in community food webs

article

Social network analysis shows direct evidence for social transmission of tool use in wild chimpanzees

scientific article (publication date: September 2014)

Sustainable computational science: the ReScience initiative ⬇️

article

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

scientific article published in 2015

Temperature and trophic structure are driving microbial productivity along a biogeographical gradient

scholarly article by Sarah M. Gray et al published 9 December 2015 in Ecography

Ten Simple Rules for Digital Data Storage

scientific article

Terminal investment induced by a bacteriophage in a rhizosphere bacterium

scientific article

Terminal investment induced by a bacteriophage in a rhizosphere bacterium

scholarly article by Timothée Poisot et al published 2 October 2012 in F1000Research

Testing predictability of disease outbreaks with a simple model of pathogen biogeography

scientific article published on 13 November 2019

The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations

scientific article published on 01 March 2022

The case for open preprints in biology

scientific article

The dissimilarity of species interaction networks

article

The marine fish food web is globally connected

scientific article published on 29 July 2019

The next generation ofaction ecology: novel approaches towards global ecological research

scientific article published in 2015

The science of the host–virus network ⬇️

journal article from 'Nature Microbiology' published in 2021

The spread of a novel behavior in wild chimpanzees: New insights into the ape cultural mind

scientific article published on March 2015

The structure of natural microbial enemy-victim networks

scientific article published in 2013

The structure of probabilistic networks

scientific article published in 2015

The structure of probabilistic networks

Trophic complementarity drives the biodiversity-ecosystem functioning relationship in food webs

scientific article

Trophic network structure emerges through antagonistic coevolution in temporally varying environments

scientific article published on 8 June 2011

Using Peer Review to Support Development of Community Resources for Research Data Management

article

Using neutral theory to reveal the contribution of meta-community processes to assembly in complex landscapes

When is an ecological network complex? Connectance drives degree distribution and emerging network properties

scientific article published on 4 February 2014

mangal - making ecological network analysis simple

scientific article published in 2015

mangal - making ecological network analysis simple

mangal - making sense of biotic interaction data

scientific article published on 03 August 2017

paco: implementing Procrustean Approach to Cophylogeny in R

scientific article published in 2017

List of works by Timothée Poisot

A comparative study of ecological specialization estimators

A conceptual framework for the evolution of ecological specialisation

A continuum of specialists and generalists in empirical communities

A continuum of specialists and generalists in empirical communities

A roadmap towards predicting species interaction networks (across space and time)

An a posteriori measure of network modularity

Analysing ecological networks of species interactions

Analyzing ecological networks of species interactions

Best publishing practices to improve user confidence in scientific software

Beyond species: why ecological interaction networks vary through space and time

BiMat : a MATLAB package to facilitate the analysis of bipartite networks

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond

Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond

Data Proliferation, Reconciliation, and Synthesis in Viral Ecology

Describe, understand and predict: why do we need networks in ecology?

Dispersal and spatial heterogeneity allow coexistence between enemies and protective mutualists

Ecogeographical rules and the macroecology of food webs

Ecological Data Should Not Be So Hard to Find and Reuse

Ecological Interactions and the Netflix Problem

Ecological interactions and the Netflix problem

Evaluating ecological uniqueness over broad spatial extents using species distribution modelling

Evolutionary Ecology of Specialisation

Facultative and obligate parasite communities exhibit different network properties ⬇️

Functional Diversity: An Epistemic Roadmap

Global knowledge gaps in species interaction networks data

High-throughput sequencing: a roadmap toward community ecology

Homogenization of species composition and species association networks are decoupled

Homogenization of species composition and species association networks are decoupled

Hosts, parasites and their interactions respond to different climatic variables

Hosts, parasites, and their interactions respond to different climatic variables

How ecological networks evolve

Identifying a common backbone of interactions underlying food webs from different ecosystems.

Inferring food web structure from predator-prey body size relationships

Inferring predator–prey interactions in food webs

Interactions between immunocompetence, somatic condition and parasitism in the chubLeuciscus cephalusin early spring

Interactions retain the co-phylogenetic matching that communities lost

Key Questions for Next-Generation Biomonitoring

Lack of quantitative training among early-career ecologists: a survey of the problem and potential solutions

Leveraging pathogen community distributions to understand outbreak and emergence potential

Linear filtering reveals false negatives in species interaction data

Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age

Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in Julia

Mangal: An open infrastructure for ecological interactions

Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web

Morphological and molecular evolution are not linked in Lamellodiscus (Plathyhelminthes, Monogenea)

Moving toward a sustainable ecological science: don't let data go to waste!

Network structure and local adaptation in co-evolving bacteria-phage interactions

Open Letter to The American Association for the Advancement of Science

Open Science Isn't Always Open to All Scientists ⬇️

Open letter to the Society for Neuroscience

Optimal transportation theory for species interaction networks ⬇️

Phage-bacteria infection networks

Refocusing multiple stressor research around the targets and scales of ecological impacts ⬇️

Resource availability affects the structure of a natural bacteria-bacteriophage community

Revealing biases in the sampling of ecological interaction networks

Revisiting the Links-Species Scaling Relationship in Food Webs

SVD entropy reveals the high complexity of ecological networks

SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia

Simulations of biomass dynamics in community food webs

Simulations of biomass dynamics in community food webs

Social network analysis shows direct evidence for social transmission of tool use in wild chimpanzees

Sustainable computational science: the ReScience initiative ⬇️

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

Temperature and trophic structure are driving microbial productivity along a biogeographical gradient

Ten Simple Rules for Digital Data Storage

Terminal investment induced by a bacteriophage in a rhizosphere bacterium

Terminal investment induced by a bacteriophage in a rhizosphere bacterium

Testing predictability of disease outbreaks with a simple model of pathogen biogeography

The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations

The case for open preprints in biology

The dissimilarity of species interaction networks

The marine fish food web is globally connected

The next generation ofaction ecology: novel approaches towards global ecological research

The science of the host–virus network ⬇️

The spread of a novel behavior in wild chimpanzees: New insights into the ape cultural mind

The structure of natural microbial enemy-victim networks

The structure of probabilistic networks