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List of works by Todd O. Yeates

(Quasi-)racemic X-ray structures of glycosylated and non-glycosylated forms of the chemokine Ser-CCL1 prepared by total chemical synthesis

scientific article

A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein

scientific article published on 24 July 2016

A Suite of Engineered GFP Molecules for Oligomeric Scaffolding

scientific article

A challenging interpretation of a hexagonally layered protein structure

scientific article

A combined algorithm for genome-wide prediction of protein function

scientific article (publication date: 4 November 1999)

A complete rule set for designing symmetry combination materials from protein molecules

scientific article published on 25 November 2020

A framework for describing topological frustration in models of protein folding.

scientific article

A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning.

scientific article published on 27 June 2003

Accurate design of co-assembling multi-component protein nanomaterials

scientific article

Accurate design of megadalton-scale two-component icosahedral protein complexes

scientific article

Alanine Scanning Mutagenesis Identifies an Asparagine–Arginine–Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment

scientific article

Algorithms for Evaluating the Long-range Accessibility of Protein Surfaces ⬇️

scientific article published on June 16, 1995

Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS

scientific article (publication date: June 2003)

An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein

scientific article

An approach to crystallizing proteins by metal-mediated synthetic symmetrization

scientific article

An approach to crystallizing proteins by synthetic symmetrization

scholarly article

Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C

scientific article

Arrangement of subunits and ordering of beta-strands in an amyloid sheet

scientific article published in October 2002

Atomic-level models of the bacterial carboxysome shell

scientific article

Bacterial microcompartment organelles: protein shell structure and evolution

scientific article

Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins

scientific article

Bacterial microcompartments insights into the structure, mechanism, and engineering applications

scientific article published on January 2011

Bacterial microcompartments: their properties and paradoxes

scientific article

Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways

scientific article published on 07 July 2015

Biochemical and spectroscopic characterization of the reaction center-LH1 complex and the carotenoid-containing B820 subunit of Chromatium purpuratum

scientific article published in April 1994

Biochemistry. How some pili pull.

scientific article

Biochemistry. Proteins in a small world

scientific article published in December 2006

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy

scientific article

Computational design of mixed chirality peptide macrocycles with internal symmetry

scientific article published on 15 October 2020

Conformational change and assembly through edge beta strands in transthyretin and other amyloid proteins

scientific article published on September 2006

Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin

scientific article

CrowdPhase: crowdsourcing the phase problem

scientific article published on 23 May 2014

Crystal structure and possible dimerization of the high-potential iron-sulfur protein from Chromatium purpuratum

scientific article

Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its l -isoaspartyl peptide substrate 1 1Edited by I. A. Wilson ⬇️

scientific article published on November 9, 2001

Crystal structure of human L-isoaspartyl methyltransferase

scientific article

Crystal structure of the apo forms of psi 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: a hinge at the base of the catalytic cleft

scientific article

Crystallization and preliminary structural studies of neurotrophin-3.

scientific article published on June 1994

Crystals of the Carotenoid Protein fromArthrospira maximaContaining Uniformly Oriented Pigment Molecules

scientific article published on 01 November 1997

Design and Characterization of an Icosahedral Protein Cage Formed by a Double-Fusion Protein Containing Three Distinct Symmetry Elements

scientific article published on 25 February 2020

Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering

scientific article published on 26 December 2019

Designed Protein Cages as Scaffolds for Building Multienzyme Materials

scientific article published on 17 January 2020

Designing supramolecular protein assemblies

scientific article

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression

scientific article

Determination of the X-ray structure of the snake venom protein omwaprin by total chemical synthesis and racemic protein crystallography

scientific article

Determining the DUF55-domain structure of human thymocyte nuclear protein 1 from crystals partially twinned by tetartohedry

scientific article

Diffusion accessibility as a method for visualizing macromolecular surface geometry

scientific article published on 16 July 2015

Directed Evolution and Structural Characterization of a Simvastatin Synthase

scientific article

Discovery of a Thermophilic Protein Complex Stabilized by Topologically Interlinked Chains

scientific article

Diverse bacterial microcompartment organelles

scientific article

Equations for determining tetartohedral twin fractions.

scientific article published on 18 October 2008

Evaluation of phase accuracyviatopological and geometrical analysis of electron-density maps

scientific article published on 01 November 2000

Exploiting genomic patterns to discover new supramolecular protein assemblies

scientific article published on January 2009

Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment

scientific article

GDAP: a web tool for genome-wide protein disulfide bond prediction

scientific article published on July 2004

Generation of oxide nanopatterns by combining self-assembly of S-layer proteins and area-selective atomic layer deposition

scientific article published in December 2008

Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds

scientific article

Identification of a subunit interface in transthyretin amyloid fibrils: evidence for self-assembly from oligomeric building blocks

scientific article published in August 2001

Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein

scientific article

Identification of rare slipknots in proteins and their implications for stability and folding

scientific article published on 2 August 2007

Insights from multiple structures of the shell proteins from the β-carboxysome

scientific article

Intensity-based domain refinement of oriented but unpositioned molecular replacement models

scientific article published in May 1990

Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition

scientific article

Isolation and characterization of soluble electron transfer proteins from Chromatium purpuratum

scientific article published in June 1996

Knotted and topologically complex proteins as models for studying folding and stability

scientific article published on 9 November 2007

MCPdb: The bacterial microcompartment database

scientific article published on 29 March 2021

Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism

scientific article published on 24 April 2018

Multiple crystal structures of actin dimers and their implications for interactions in the actin filament

scientific article (published 2008-04-01)

On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker

scientific article

Principles for designing ordered protein assemblies

scientific article published on 10 September 2012

Progress in low-resolution ab initio phasing with CrowdPhase

scientific article published on March 2016

Protein Structures Forming the Shell of Primitive Bacterial Organelles

scientific article

Protein arrays made to order

scientific article published on 31 July 2011

Protein function in the post-genomic era.

scientific article

Protein repair methyltransferase from the hyperthermophilic archaeon Pyrococcus furiosus. Unusual methyl-accepting affinity for D-aspartyl and N-succinyl-containing peptides

scientific article published in November 2001

Protein stabilization in a highly knotted protein polymer

scientific article

Protein structure: evolutionary bridges to new folds.

scientific article

Protein-based organelles in bacteria: carboxysomes and related microcompartments

scientific article

Racemic protein crystallography

scientific article

Rational improvement of simvastatin synthase solubility in Escherichia coli leads to higher whole-cell biocatalytic activity.

scientific article

Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG).

scientific article

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

scientific article published on 29 June 2015

Responses to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin

scientific article

Selective molecular transport through the protein shell of a bacterial microcompartment organelle

scientific article

Self-assembly in the carboxysome: a viral capsid-like protein shell in bacterial cells.

scientific article published on June 2007

Short N-terminal sequences package proteins into bacterial microcompartments

scientific article published in 2010

Simple statistics for intensity data from twinned specimens

scientific article published on 01 March 1988

Single-wavelength phasing strategy for quasi-racemic protein crystal diffraction data

scientific article

Split green fluorescent protein as a modular binding partner for protein crystallization

scientific article

Structural Insight into the Mechanisms of Transport across the Salmonella enterica Pdu Microcompartment Shell

scientific article

Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome

scientific article published in June 2007

Structural and Biochemical Characterization of the Salicylyl-acyltranferase SsfX3 from a Tetracycline Biosynthetic Pathway

scientific article

Structural and EPR characterization of the soluble form of cytochrome c-550 and of the psbV2 gene product from the cyanobacterium Thermosynechococcus elongatus

scientific article

Structural homology of reaction centers from Rhodopseudomonas sphaeroides and Rhodopseudomonas viridis as determined by x-ray diffraction

scientific article

Structure and Identification of a Pterin Dehydratase-like Protein as a Ribulose-bisphosphate Carboxylase/Oxygenase (RuBisCO) Assembly Factor in the α-Carboxysome

scientific article

Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly

scientific article

Structure and folding of a designed knotted protein

scientific article

Structure and function in complex macromolecular assemblies: Some evolutionary themes

scientific article published on 21 March 2012

Structure and mechanisms of a protein-based organelle in Escherichia coli

scientific article

Structure determination of a cocaine hydrolytic antibody from a pseudomerohedrally twinned crystal

scientific article published on 23 November 2002

Structure of Dihydromethanopterin Reductase, a Cubic Protein Cage for Redox Transfer

scientific article

Structure of a 16-nm cage designed by using protein oligomers

scientific article

Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor

scientific article

Structure of a designed protein cage that self-assembles into a highly porous cube

scientific article

Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression

scientific article

Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

scientific article published on 18 March 2016

Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15

scientific article

Structure of the PduU shell protein from the Pdu microcompartment of Salmonella

scientific article

Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803

scientific article

Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii

scientific article

Structures and Functional Implications of an AMP-Binding Cystathionine β-Synthase Domain Protein from a Hyperthermophilic Archaeon

scientific article

Structures of SET domain proteins: protein lysine methyltransferases make their mark

scientific article

Structures of potent anticancer compounds bound to tubulin

scientific article published on 27 May 2015

Symmetry Breaking and Structural Polymorphism in a Bacterial Microcompartment Shell Protein for Choline Utilization

scientific article published on 04 September 2020

Synthetic symmetrization in the crystallization and structure determination of CelA fromThermotoga maritima

scientific article

The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus

scientific article

The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment

scientific article published on 11 May 2015

The asymmetric regions of rotation functions between Patterson functions of arbitrarily high symmetry

scientific article published on 01 January 1993

The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin

scientific article

The crystal structure of a cyanobacterial water-soluble carotenoid binding protein

scientific article

The crystal structure of adenylosuccinate lyase from Pyrobaculum aerophilum reveals an intracellular protein with three disulfide bonds

scientific article

The crystal structure of the first enzyme in the pantothenate biosynthetic pathway, ketopantoate hydroxymethyltransferase, from M tuberculosis

scientific article

The design of symmetric protein nanomaterials comes of age in theory and practice

scientific article

The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene

scientific article published on 7 June 2016

The genomics of disulfide bonding and protein stabilization in thermophiles

scientific article

The protein shells of bacterial microcompartment organelles

scientific article

The role of distant mutations and allosteric regulation on LovD active site dynamics

scientific article

The shells of BMC-type microcompartment organelles in bacteria

scientific article

The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway

scientific article

The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two

scientific article

Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography

scientific article

Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals

scientific article

Use of logic relationships to decipher protein network organization

scientific article

Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria

scientific article

Utilizing logical relationships in genomic data to decipher cellular processes

scientific article

Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps

scientific article

Widespread disulfide bonding in proteins from thermophilic archaea

scientific article

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