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List of works by Barbara Treutlein

A conversation with ChatGPT on the role of computational systems biology in stem cell research ⬇️

scientific article published in January 2023

A nomenclature consensus for nervous system organoids and assembloids

scientific article published on 28 September 2022

A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex

scientific article published on 18 October 2018

Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia

scientific article published on 11 March 2019

Author response: Comparison of induced neurons reveals slower structural and functional maturation in humans than in apes

scientific article

CSS: cluster similarity spectrum integration of single-cell genomics data

scientific article published on 01 September 2020

Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing

scientific article

Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq

scientific article

Characterization of RNA content in individual phase-separated coacervate microdroplets

scientific article published on 12 May 2022

Charting human development using a multi-endodermal organ atlas and organoid models

scientific article

Comparison of induced neurons reveals slower structural and functional maturation in humans than in apes

scientific article

Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis

scientific article published in Nature Communications

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development

scientific article (publication date: 26 September 2016)

Direct observation of single RNA polymerase processing through a single endogenous gene in a living yeast cell

scientific article

Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program

scientific article published on 18 June 2018

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq

scientific article published on 08 June 2016

Dynamic Architecture of a Minimal RNA Polymerase II Open Promoter Complex

article by Barbara Treutlein et al published April 2012 in Molecular Cell

Dynamic Architecture of the RNA Polymerase II Open Promoter Complex

Engineering of fully humanized and vascularized 3D bone marrow niches sustaining undifferentiated human cord blood hematopoietic stem and progenitor cells

scientific article published in 2021

Evaluation of Wu et al.: Strengthening Single-Cell Bioinformatic Comparisons for Improving Organoid Differentiation

scientific article published on 01 March 2019

Extending the Nano-Positioning System (NPS)

Extracellular LGALS3BP regulates neural progenitor position and relates to human cortical complexity

scientific article published on 02 November 2021

Fibroblast dedifferentiation as a determinant of successful regeneration

scientific article published on 01 May 2021

High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development

scientific article published in 2022

High-throughput muscle fiber typing from RNA sequencing data

scientific article published in 2022

High-throughput single-cell transcriptomics on organoids

scientific article published on 29 November 2018

Human Stem Cell Resources Are an Inroad to Neandertal DNA Functions

scientific article published on 09 June 2020

Human cerebral organoids recapitulate gene expression programs of fetal neocortex development

scientific article (publication date: 22 December 2015)

Human development: Advances in mini-brain technology

scientific article published in May 2017

Human organomics: a fresh approach to understanding human development using single-cell transcriptomics

scientific article published in May 2017

In situ synthesis of lipopeptides as versatile receptors for the specific binding of nanoparticles and liposomes to solid-supported membranes

scientific article published in July 2008

Inferring and perturbing cell fate regulomes in human brain organoids

scientific article published in 2022

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution

scientific article published on 27 February 2020

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution

scientific article published on 01 September 2020

Lineage recording in human cerebral organoids

scientific article published on 30 December 2021

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury

scientific article

Mapping Development of the Human Intestinal Niche at Single-Cell Resolution

scientific article published on 25 November 2020

Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq

scientific article

Mapping human cell phenotypes to genotypes with single-cell genomics

scientific article published on 01 September 2019

Multilineage communication regulates human liver bud development from pluripotency.

scientific article published on 14 June 2017

NGN2 induces diverse neuron types from human pluripotency

scientific article

Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex

scientific article

Nano-Positioning-System Provides Structural Insights into ATP-Dependent Nucleosome Remodeling

Nano-Positioning-System Reveals Structure of the RNA Polymerase II Initially Transcribing Complex (ITC)

Optimal Hypoxia Regulates Human iPSC-Derived Liver Bud Differentiation through Intercellular TGFB Signaling

scientific article published on 19 July 2018

Organoid single-cell genomic atlas uncovers human-specific features of brain development

scientific article published on 16 October 2019

Quantitative assessment of single-cell RNA-sequencing methods.

scientific article

Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons

scientific article published on September 2017

Reconstructing complex lineage trees from scRNA-seq data using MERLoT

scientific article published on 01 September 2019

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

scientific article

Resolving Neurodevelopmental and Vision Disorders Using Organoid Single-Cell Multi-omics

scientific article published on 01 September 2020

Robust detection of undifferentiated iPSC among differentiated cells

scientific article published on 24 June 2020

Sequencing perturbed cortex development

scientific article

ShinyCortex: Exploring Single-Cell Transcriptome Data From the Developing Human Cortex.

scientific article published on 15 May 2018

Single Cell Transcriptomes Derived from Human Cervical and Uterine Tissue during Pregnancy

scientific article published on 15 May 2019

Single cell analyses of development in the modern era

scientific article published on 27 June 2019

Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration

scientific article

Single-cell genomic analysis of human cerebral organoids

scientific article published on 13 May 2020

Single-cell genomics to guide human stem cell and tissue engineering

scientific article published on 31 August 2018

Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains

scientific article published on 18 May 2020

Single-molecule studies of RNA polymerases

scientific article

Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes.

scientific article published on 23 March 2017

The Nano-Positioning System - A Fret-Based Tool for Macro-Molecular Structural Analysis

The Organoid Cell Atlas

scientific article

The Organoid Cell Atlas: A Rosetta Stone for Biomedical Discovery and Regenerative Therapy ⬇️

journal article published in 2020

The road ahead in genetics and genomics

scientific article published on 24 August 2020

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