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List of works by Judit Villén

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data

scientific article published in 2022

A conserved MST-FOXO signaling pathway mediates oxidative-stress responses and extends life span

scientific article

A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation

scientific article published on 30 July 2005

A novel mistranslating tRNA model in <i>Drosophila melanogaster</i> has diverse, sexually dimorphic effects

scientific article published in 2022

A practical recipe to survey phosphoproteomes

scientific article

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

scientific article

A quantitative atlas of mitotic phosphorylation

scientific article

A site-specific, multiplexed kinase activity assay using stable-isotope dilution and high-resolution mass spectrometry

scientific article

A tissue-specific atlas of mouse protein phosphorylation and expression

scientific article (publication date: 23 December 2010)

Affinity-Based Probes Based on Type II Kinase Inhibitors

scientific article

Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases

scientific article published on 24 August 2010

An AMPK-FOXO pathway mediates longevity induced by a novel method of dietary restriction in C. elegans

scientific article published on 27 September 2007

An atlas of human kinase regulation

scientific article published on December 2016

Analysis of Molecular Networks in the Cerebellum in Chronic Schizophrenia: Modulation by Early Postnatal Life Stressors in Murine Models

scientific article published on 17 September 2021

Angiogenin-induced tRNA fragments inhibit translation initiation

scientific article

Author Correction: mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis

scientific article published on 08 September 2020

Chemical genetic screen for AMPKα2 substrates uncovers a network of proteins involved in mitosis

scientific article

Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries

Drafts of the human proteome

E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis

scientific article

Enrichment of Modified Peptides via Immunoaffinity Precipitation with Modification-Specific Antibodies

scientific article published in March 2016

Enrichment of Phosphopeptides via Immobilized Metal Affinity Chromatography

scientific article published in March 2016

Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis

scientific article published on November 2008

Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains

scientific article published on 26 March 2015

Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast

scientific article published on 11 July 2008

Follistatin-like 3 (FSTL3) mediated silencing of transforming growth factor β (TGFβ) signaling is essential for testicular aging and regulating testis size

scientific article published on 13 February 2013

Functional Mimicry of a Discontinuous Antigenic Site by a Designed Synthetic Peptide

scientific article published on 01 March 2002

Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG

scientific article published in 2022

Genetic inhibition of hepatic acetyl-CoA carboxylase activity increases liver fat and alters global protein acetylation

scientific article

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

scientific article published on 09 June 2013

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

scientific article

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

scientific article (publication date: 14 December 2007)

Hypomorphic Notch 3 alleles link Notch signaling to ischemic cerebral small-vessel disease

scientific article

Identification of phosphosites that alter protein thermal stability

publication published on 17 June 2021

Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer

scientific article

Large-scale characterization of HeLa cell nuclear phosphoproteins

scientific article

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

scientific article published in March 2007

Large-scale phosphorylation analysis of mouse liver

scholarly article

Lipin 2 binds phosphatidic acid by the electrostatic hydrogen bond switch mechanism independent of phosphorylation.

scientific article

Modulating Mistranslation Potential of tRNASer in Saccharomyces cerevisiae

scientific article published on 04 September 2019

Optimization and use of peptide mass measurement accuracy in shotgun proteomics

scientific article published on 23 April 2006

PKC downregulation upon rapamycin treatment attenuates mitochondrial disease

scientific article published on 14 December 2020

Phosphoproteome Analysis of Fission Yeast

article

Phosphoproteome analysis of Drosophila melanogaster embryos

scientific article published on 8 March 2008

Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling

scientific article

Phosphoproteomic analysis of the developing mouse brain

scientific article

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover ⬇️

scientific article published on 3 July 2015

Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry

scientific article

Proteome and phosphoproteome analysis of brown adipocytes reveals that RICTOR loss dampens global insulin/AKT signaling

scientific article published on 31 March 2020

Proteomic Analysis of Protein Posttranslational Modifications by Mass Spectrometry

article

Proteomic Profiling of ClpXP Substrates after DNA Damage Reveals Extensive Instability within SOS Regulon

article

R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies

scientific article published on 01 December 2019

Rational dissection of binding surfaces for mimicking of discontinuous antigenic sites.

scientific article

Regulation of neuronal cell death by MST1-FOXO1 signaling

scientific article

S. pombe LSD1 Homologs Regulate Heterochromatin Propagation and Euchromatic Gene Transcription

article

Sensitive multiplexed analysis of kinase activities and activity-based kinase identification

scientific article

Signaling networks assembled by oncogenic EGFR and c-Met

scholarly article

Studies on the mechanism of RNAi-dependent heterochromatin assembly

scientific article published on January 2006

Survey of activated FLT3 signaling in leukemia

scientific article

Synthetic approaches to multivalent lipopeptide dendrimers containing cyclic disulfide epitopes of foot-and-mouth disease virus

scientific article

Synthetic peptides as functional mimics of a viral discontinuous antigenic site

scientific article published in September 2001

Systematic functional prioritization of protein posttranslational modifications

scientific article

Targeting of AMSH to endosomes is required for epidermal growth factor receptor degradation

scientific article

The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8.

scientific article published on November 2008

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

scientific article published on January 2008

The gammaTuRC revisited: a comparative analysis of interphase and mitotic human gammaTuRC redefines the set of core components and identifies the novel subunit GCP8

scientific article

The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation

scientific article

The impact of microRNAs on protein output

scientific article

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses

scientific article published on 18 September 2008

The proteomic landscape of triple-negative breast cancer

scientific article

The septins function in G1 pathways that influence the pattern of cell growth in budding yeast.

scientific article

Thesaurus: quantifying phosphopeptide positional isomers

scientific article published on 29 July 2019

Towards a multi-site synthetic vaccine to foot-and-mouth disease: addition of discontinuous site peptide mimic increases the neutralization response in immunized animals

article

Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex

scientific article

Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast

Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation

scientific article

mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues

scientific article

mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis

scientific article published on 29 January 2020

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