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List of works by Timothy W. Clark

A Data Citation Roadmap for Scholarly Data Repositories ⬇️

journal article from 'bioRxiv' published in 2016

A Data Citation Roadmap for Scientific Publishers

A data citation roadmap for scholarly data repositories

scientific article published on 10 April 2019

A data citation roadmap for scientific publishers ⬇️

journal article from 'Scientific Data' published in 2018

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

scientific article published on 20 March 2012

Achieving human and machine accessibility of cited data in scholarly publications

scientific article

Achieving human and machine accessibility of cited data in scholarly publications

Achieving human and machine accessibility of cited data in scholarly publications

Achieving human and machine accessibility of cited data in scholarly publications

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Advancing translational research with the Semantic Web

scientific article (publication date: 9 May 2007)

AlzPharm: integration of neurodegeneration data using RDF.

scientific article

AlzSWAN knowledge base for Alzheimer research

Alzforum

scientific article published on January 2007

Alzforum and SWAN: the present and future of scientific web communities

scientific article published on 17 May 2007

An agile model for semantic integration of biomedical web communities

article

An open annotation ontology for science on web 3.0 ⬇️

scientific article (publication date: 17 May 2011)

Analysis of extracellular mRNA in human urine reveals splice variant biomarkers of muscular dystrophies

scientific article published in Nature Communications

Building biomedical web communities using a semantically aware content management system

scientific article

Computational knowledge integration in biopharmaceutical research

scientific article published on September 2003

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

scientific article

Editorial: Identity and interoperability in bioinformatics ⬇️

scientific article published on 01 March 2003

Effects of gender on nigral gene expression and parkinson disease

scientific article published on 3 March 2007

FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics

scientific article published on 15 July 2021

FRBR-aligned Bibliographic Ontology

2018 version of ontology for describing entities that are or may be published

Five Colours

print by Thomas A. Clark

From biomedical cloud platforms to microservices: next steps in FAIR data and analysis

scientific article published on 8 September 2022

Genome-wide histone acetylation is altered in a transgenic mouse model of Huntington's disease

scientific article

Globally distributed object identification for biological knowledgebases

scientific article published on March 2004

Half Mile Walk

print by Thomas A. Clark

Histones associated with downregulated genes are hypo-acetylated in Huntington's disease models

scientific article

Huntingtin modulates transcription, occupies gene promoters in vivo, and binds directly to DNA in a polyglutamine-dependent manner

scientific article published on October 2008

Interoperability and FAIRness through a novel combination of Web technologies ⬇️

scientific article (publication date: 24 April 2017)

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Knowledge Integration in Biomedicine: Technology and Community

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

scientific article

Neuronal calcineurin transcriptional targets parallel changes observed in Alzheimer disease brain

On Imaginative Space

print by Thomas A. Clark

Open Science strategies for NIH data management, sharing, and citation

Open Science strategies for NIH data management, sharing, and citation

Open semantic annotation of scientific publications using DOMEO.

scientific article published on 24 April 2012

PAV ontology: provenance, authoring and versioning

scientific article

Pain Research Forum: application of scientific social media frameworks in neuroscience

scientific article published in 2014

Produce and Consume Linked Data with Drupal!

article by Stéphane Corlosquet et al published 2009 in Lecture Notes in Computer Science

Semantic Web repositories for genomics data using the eXframe platform

scientific article

Tau induces blood vessel abnormalities and angiogenesis-related gene expression in P301L transgenic mice and human Alzheimer's disease

scientific article

The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)

The Future of Research Communication

scientific article

The Mountains of Holland

artist's book by Thomas A. Clark

The SWAN biomedical discourse ontology

scientific article

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside ⬇️

scientific article (publication date: 17 May 2011)

Toward interoperable bioscience data

scientific article (publication date: 27 January 2012)

UVA School of Data Science Open Access Guidelines and Recommendations

administrative guideline

Uniform Resolution of Compact Identifiers for Biomedical Data

preprint

Uniform resolution of compact identifiers for biomedical data.

scientific article

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR

Web Annotation as a First-Class Object

eXframe: reusable framework for storage, analysis and visualization of genomics experiments

scientific article

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