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Authors whose works are in public domain in at least one jurisdiction

List of works by Nathan D. Grubaugh

68. Active Monitoring of a Healthcare Worker Cohort During the COVID-19 Epidemic

scientific article

Abstract S03-03: Cancer patients display diminished viral RNA clearance and altered T cell responses during SARS-CoV-2 infection

scholarly article

Acute encephalopathy with elevated CSF inflammatory markers as the initial presentation of COVID-19

scientific article published on 18 June 2020

Acute encephalopathy with elevated CSF inflammatory markers as the initial presentation of COVID-19

scientific article published on 12 May 2020

Adventitious viruses persistently infect three commonly used mosquito cell lines

scientific article published on 26 June 2018

Adventitious viruses persistently infect three commonly used mosquito cell lines

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

article published in 2018

Analytical sensitivity and efficiency comparisons of SARS-COV-2 qRT-PCR primer-probe sets

scientific article published on 01 April 2020

Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT-qPCR primer-probe sets

scientific article published on 10 July 2020

Arbovirus coinfection and co-transmission: A neglected public health concern?

scientific article published on 22 January 2019

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

scientific article published on 4 May 2020

Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology

scientific article (preprint)

Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection

scientific article published on 8 March 2018

Delayed production of neutralizing antibodies correlates with fatal COVID-19

journal article published in 2021

Detection of SARS-CoV-2 RNA by multiplex RT-qPCR

scientific article published on 07 October 2020

Diverse Functional Autoantibodies in Patients with COVID-19

scientific article published on 12 December 2020

Diverse Functional Autoantibodies in Patients with COVID-19

scientific article published 19 May 2021

Dynamics of West Nile virus evolution in mosquito vectors

scientific article

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic

scientific article published on November 2016

Endless Forms: Within-Host Variation in the Structure of the West Nile Virus RNA Genome during Serial Passage in Bird Hosts

scientific article published in 2019

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

scientific article published on 06 November 2020

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article (publication date: 24 May 2017)

Evaluation of a field-portable DNA microarray platform and nucleic acid amplification strategies for the detection of arboviruses, arthropods, and bloodmeals

scientific article

Evaluation of ivermectin mass drug administration for malaria transmission control across different West African environments

scientific article

Experimental Evolution to Study Virus Emergence

scientific article published on March 2017

Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness

scientific article published on 20 May 2015

Fetal demise and failed antibody therapy during Zika virus infection of pregnant macaques

scientific article published on 24 April 2018

Genetic Drift during Systemic Arbovirus Infection of Mosquito Vectors Leads to Decreased Relative Fitness during Host Switching

scientific article published on 29 March 2016

Genetic characterization of the Zika virus epidemic in the US Virgin Islands

scientific article (publication date: 3 March 2017)

Genome sequencing reveals Zika virus diversity and spread in the Americas

scientific article (publication date: 18 February 2017)

Genomic Epidemiology as a Public Health Tool to Combat Mosquito-Borne Virus Outbreaks

scientific article published on 01 March 2020

Genomic Insights into Zika Virus Emergence and Spread

scientific article published in March 2018

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

scientific article

Host response-based screening to identify undiagnosed cases of COVID-19 and expand testing capacity

scientific article published on 05 June 2020

Increased SARS-CoV-2 Testing Capacity with Pooled Saliva Samples

scientific article

Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas

scientific article published on 18 January 2018

International travelers and genomics uncover a ‘hidden’ Zika outbreak

scientific article published on 14 December 2018

Isolation and genomic characterization of Chaoyang virus strain ROK144 from Aedes vexans nipponii from the Republic of Korea

scientific article

Isolation of a Novel Insect-Specific Flavivirus from Culiseta melanura in the Northeastern United States

scientific article published on 25 January 2016

Kinetics of antibody responses dictate COVID-19 outcome

scientific article published on 22 December 2020

Longitudinal analyses reveal immunological misfiring in severe COVID-19

scientific article published on 27 July 2020

Longitudinal immunological analyses reveal inflammatory misfiring in severe COVID-19 patients

scientific article

Making Sense of Mutation: What D614G Means for the COVID-19 Pandemic Remains Unclear

scientific article published on 03 July 2020

Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics

scientific article published on 18 September 2020

Misperceived Risks of Zika-related Microcephaly in India

scientific article published on 27 February 2019

Multi-gene detection and identification of mosquito-borne RNA viruses using an oligonucleotide microarray

scientific article

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

scientific article

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

scientific article (publication date: 9 January 2017)

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

scientific article

Navigating the Zika panic

scientific article

Neutralizing human monoclonal antibodies prevent Zika virus infection in macaques.

scientific article published on October 2017

Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2

scientific article published on 06 June 2022

Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL.

scientific article published on 21 December 2017

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern

Pooling saliva to increase SARS-CoV-2 testing capacity

scientific article published on 03 September 2020

Precision epidemiology for infectious disease control

scientific article published on 06 February 2019

Real-time public health communication of local SARS-CoV-2 genomic epidemiology

scientific article published on 21 August 2020

SARS-CoV-2 Infection of the Placenta

scientific article published on 5 May 2020

SARS-CoV-2 RNA concentrations in primary municipal sewage sludge as a leading indicator of COVID-19 outbreak dynamics

scientific article published on 22 May 2020

SARS-CoV-2 infection of the placenta

scientific article published on 23 June 2020

Saliva for Detection of SARS-CoV-2. Reply

scientific article

Saliva is more sensitive for SARS-CoV-2 detection in COVID-19 patients than nasopharyngeal swabs

scientific article published on 22 April 2020

Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2

scientific article published on 28 August 2020

SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity

scientific article

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

Sampling host-seeking anthropophilic mosquito vectors in west Africa: comparisons of an active human-baited tent-trap against gold standard methods

scientific article

Sex differences in immune responses that underlie COVID-19 disease outcomes

scientific article published on 26 August 2020

Sex differences in immune responses to SARS-CoV-2 that underlie disease outcomes

scientific article published on 9 June 2020

Simply saliva: stability of SARS-CoV-2 detection negates the need for expensive collection devices

scientific article published on 04 August 2020

Small RNA responses of Culex mosquitoes and cell lines during acute and persistent virus infection

scientific article published on 05 April 2019

Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva

scientific article

Temporal and Spatial Variability of Entomological Risk Indices for West Nile Virus Infection in Northern Colorado: 2006-2013.

scientific article published on 30 December 2015

The Sensitivity of Respiratory Tract Specimens for the Detection of SARS-CoV-2: A Protocol for a Living Systematic Review and Meta-Analysis

scientific article published on 04 July 2020

The Use of Xenosurveillance to Detect Human Bacteria, Parasites, and Viruses in Mosquito Bloodmeals

scientific article published on 30 May 2017

Tracking virus outbreaks in the twenty-first century

scientific article published on 13 December 2018

Transmission bottlenecks and RNAi collectively influence tick-borne flavivirus evolution

scientific article published on July 2016

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic

scholarly article by Nathan D. Grubaugh et al published 22 August 2019 in Cell

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain

scientific article published on 31 October 2019

Two sides of a coin: a Zika virus mutation selected in pregnant rhesus macaques promotes fetal infection in mice but at a cost of reduced fitness in nonpregnant macaques and diminished transmissibility by vectors

scientific article published on 30 September 2020

We shouldn't worry when a virus mutates during disease outbreaks

scientific article published on 01 April 2020

West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses

scientific article

West Nile Virus Population Structure, Injury, and Interferon-Stimulated Gene Expression in the Brain From a Fatal Case of Encephalitis

scientific article

Why does Japan have so few cases of COVID19?

scientific article published on 10 April 2020

Xenosurveillance: a novel mosquito-based approach for examining the human-pathogen landscape

scientific article

Zika virus evolution and spread in the Americas

scientific article

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