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List of works by Xin Liu

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

scientific article published on 04 February 2019

10KP: A phylodiverse genome sequencing plan.

scientific article

A genome draft of the legless anguid lizard, Ophisaurus gracilis

scientific article

A novel Enterovirus 96 circulating in China causes hand, foot, and mouth disease

scientific article published on 7 February 2017

A reference gene catalogue of the pig gut microbiome

scientific article published on 19 September 2016

A reference human genome dataset of the BGISEQ-500 sequencer.

scientific article

An atlas of the protein-coding genes in the human, pig, and mouse brain

scientific article published on 01 March 2020

Analysis of 427 genomes reveals moso bamboo population structure and genetic basis of property traits

scientific article published in 2021

Analysis of elite variety tag SNPs reveals an important allele in upland rice

scientific article published in January 2013

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Author Correction: The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

scientific article published on 16 July 2020

Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations

scientific article

Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.

scientific article

Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society

scientific article published in 2024

Chromosome-Level Comprehensive Genome of Mangrove Sediment-Derived Fungus Penicillium variabile HXQ-H-1

scientific article published on 23 December 2019

Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits

scientific article published in 2023

Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops

scientific article

Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses

scientific article published on 05 May 2020

Complete Genome Sequence of a Salivirus in Respiratory Specimens from a Child with Adenovirus Infection

scientific article

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

scientific article published in Nature Communications

Fast-suppressor screening for new components in protein trafficking, organelle biogenesis and silencing pathway in Arabidopsis thaliana using DEX-inducible FREE1-RNAi plants

scientific article published on 14 May 2015

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

First documented case of avian influenza (H5N1) virus infection in a lion

scientific article published on 21 December 2016

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

publication published on 08 February 2021

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

article

Genome-wide Target Enrichment-aided Chip Design: a 66 K SNP Chip for Cashmere Goat

scientific article

Genome-wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea

scientific article published on 10 January 2020

Genomes of early-diverging streptophyte algae shed light on plant terrestrialization

scientific article published on 16 December 2019

Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda

scientific article published on 27 October 2020

Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan

scientific article published on 11 April 2019

Global marine microbial diversity and its potential in bioprospecting

scientific article published on 04 September 2024

Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea

scientific article published on 01 December 2018

Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify.

scientific article published on 30 October 2017

Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)

scientific article published on 28 August 2019

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

scientific article

Multi-omics landscape and molecular basis of radiation tolerance in a tardigrade

scientific article published on 24 October 2024

Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B

scientific article published on 06 February 2017

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

scientific article published in Science

Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.).

scientific article published on 16 December 2016

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

scientific article

Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil

scientific article published on 13 September 2019

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Retinoic acid combined with spermatogonial stem cell conditions facilitate the generation of mouse germ-like cells

scientific article published on 17 March 2017

Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).

scientific article

The Cycas genome and the early evolution of seed plants

scientific article published on 18 April 2022

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

scientific article

The genetic architecture of floral traits in the woody plant Prunus mume.

scientific article published on 27 April 2018

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

scientific article published on 3 May 2016

The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

scientific article published on 22 June 2020

The genome sequence of the orchid Phalaenopsis equestris

scientific article

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

scientific article

The gut microbiome in atherosclerotic cardiovascular disease.

scientific article published on 10 October 2017

The structure and function of the global citrus rhizosphere microbiome

scientific article published in Nature Communications

Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

scientific article published on 03 January 2022

Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation.

scientific article

Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences

scientific article

Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia

article

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