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List of works by Stefan Spring

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article

A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data

scientific article

Anaerohalosphaera lusitana gen. nov., sp. nov., and Limihaloglobus sulfuriphilus gen. nov., sp. nov., isolated from solar saltern sediments, and proposal of Anaerohalosphaeraceae fam. nov. within the order Sedimentisphaerales

scientific article

Biogeochemical transformations of arsenic in circumneutral freshwater sediments

scientific article published on 01 April 2003

Caldimicrobium rimae gen. nov., sp. nov., an extremely thermophilic, facultatively lithoautotrophic, anaerobic bacterium from the Uzon Caldera, Kamchatka

scientific article

Caldisalinibacter kiritimatiensisgen. nov., sp. nov., a Moderately Thermohalophilic Thiosulfate-Reducing Bacterium from a Hypersaline Microbial Mat

article

Caldithrix abyssi gen. nov., sp. nov., a nitrate-reducing, thermophilic, anaerobic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent, represents a novel bacterial lineage

scientific article

Caldithrix palaeochoryensis sp. nov., a thermophilic, anaerobic, chemo-organotrophic bacterium from a geothermally heated sediment, and emended description of the genus Caldithrix

scientific article

Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal vent.

scientific article

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis

scholarly article

Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclass

scientific article

Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum

scientific article published on 14 June 2016

Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria

scientific article

Comparative Sequence Analysis of 23S rRNA from Proteobacteria

article

Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat

scientific article

Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288)

scientific article

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).

scientific article

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).

scientific article

Complete genome sequence of Archaeoglobus profundus type strain (AV18)

scientific article

Complete genome sequence of Brachyspira murdochii type strain (56-150)

scientific article

Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)

scientific article

Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

scientific article

Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).

scientific article

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)

scientific article

Complete genome sequence of Desulfarculus baarsii type strain (2st14).

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).

scientific article

Complete genome sequence of Desulfomicrobium baculatum type strain (X)

scientific article

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575)

scientific article

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). ⬇️

scientific article

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)

scientific article

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). ⬇️

scientific article

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

scientific article

Complete genome sequence of Marivirga tractuosa type strain (H-43) ⬇️

scientific article

Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)

scientific article

Complete genome sequence of Methanothermus fervidus type strain (V24S)

scientific article

Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

scientific article

Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).

scientific article

Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

scientific article

Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

article

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1)

scientific article

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).

scientific article

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P)

scientific article

Complete genome sequence of Thermosphaera aggregans type strain (M11TL)

scientific article

Complete genome sequence of Tolumonas auensis type strain (TA 4)

scientific article published on 23 September 2011

Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)

scientific article

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

scientific article

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

scientific article

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)

scientific article

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

scientific article published on 15 April 2013

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T))

scientific article published on 11 December 2012

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

scientific article

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

scientific article

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))

scientific article

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Cultivated anaerobic acidophilic/acidotolerant thermophiles from terrestrial and deep-sea hydrothermal habitats

scientific article published on 22 June 2005

Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia

scholarly article

Deferribacter abyssi sp. nov., an anaerobic thermophile from deep-sea hydrothermal vents of the Mid-Atlantic Ridge.

scientific article

Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus

scientific article

Desulfosporosinus hippei sp. nov., a mesophilic sulfate-reducing bacterium isolated from permafrost.

scientific article

Desulfosporosinus lacus sp. nov., a sulfate-reducing bacterium isolated from pristine freshwater lake sediments

scientific article

Desulfotomaculum alcoholivorax sp. nov., a moderately thermophilic, spore-forming, sulfate-reducer isolated from a fluidized-bed reactor treating acidic metal- and sulfate-containing wastewater

scientific article

Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill

scientific article

Desulfotomaculum thermosubterraneum sp. nov., a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area

scientific article

Desulfovibrio idahonensis sp. nov., sulfate-reducing bacteria isolated from a metal(loid)-contaminated freshwater sediment

scientific article published on 15 July 2009

Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan.

scientific article

Desulfurispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming sulfate-reducer isolated from a sulfidogenic fluidized-bed reactor.

scientific article

Detection and in situ identification of representatives of a widely distributed new bacterial phylum

scientific article

Diversity of Magnetotactic Bacteria

article

Evidence for microbial Fe(III) reduction in anoxic, mining-impacted lake sediments (Lake Coeur d'Alene, Idaho).

scientific article

Ferribacterium limneticum , gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments

article

Function and Evolution of the Sox Multienzyme Complex in the Marine Gammaproteobacterium Congregibacter litoralis

scientific article published on 31 March 2014

Genome Sequence of Gammaproteobacterial Pseudohaliea rubra Type Strain DSM 19751, Isolated from Coastal Seawater of the Mediterranean Sea.

scientific article published on 20 November 2014

Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

scientific article published in March 2014

Genome analysis of Desulfotomaculum gibsoniae strain Groll(T) a highly versatile Gram-positive sulfate-reducing bacterium

scientific article

Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T)

scientific article published on 15 April 2013

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments

scientific article

Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii

scientific article published on 19 March 2015

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

scientific article

Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments

scientific article

Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094(T)), a moderately halophilic member of the Roseobacter clade

scientific article published on 15 March 2014

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

scientific article

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)

scientific article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequence of the pink to light reddish-pigmented Rubellimicrobium mesophilum type strain (DSM 19309(T)), a representative of the Roseobacter group isolated from soil, and emended description of the species

scientific article

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.

scientific article published on 15 April 2013

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota

scientific article published on 20 February 2017

Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein

scientific article published on 4 March 2013

Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov.

scientific article

Halobacillus gen. nov., with Descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and Transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov.

scientific article

High Diversity of Culturable Prokaryotes in a Lithifying Hypersaline Microbial Mat

article

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

scientific article published on 9 February 2015

Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge

scientific article

Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies

scientific article

Improved technique for the isolation of magnetotactic spirilla from a freshwater sediment and their phylogenetic characterization

scientific article published in September 1999

Influence of Microbially Reducible Fe(III) on the Bacterial Community Structure of Estuarine Surface Sediments

article

Isolation and Taxonomic Characterization of a Halotolerant, Facultatively Iron-reducing Bacterium

article

Isolation and characterization of a novel As(V)-reducing bacterium: implications for arsenic mobilization and the genus Desulfitobacterium

scientific article

Isolation of tannin-degrading bacteria isolated from feces of the Japanese large wood mouse, Apodemus speciosus, feeding on tannin-rich acorns

scientific article published in June 2005

Magnetotactic Bacteria

article

Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate-accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov.

scientific article

Methanogenium frittonii Harris et al. 1996 is a later synonym of Methanoculleus thermophilus (Rivard and Smith 1982) Maestrojuan et al. 1990.

scientific article

Microbial Fe(III) Reduction in Activated Sludge

article

Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability

scientific article

Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture

scientific article

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

scientific article

Novel thermophilic sulfate-reducing bacteria from a geothermally active underground mine in Japan.

scientific article

Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic, facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent.

scientific article

Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment

scientific article published on 20 April 2009

Ottowia thiooxydans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov.

scientific article

Peptoniphilus methioninivorax sp. nov., a Gram-positive anaerobic coccus isolated from retail ground beef

scientific article

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207)

scientific article

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

scientific article

Phylogenetic Analysis of Uncultured Magnetotactic Bacteria from the Alpha-Subclass of Proteobacteria

article

Phylogenetic Diversity and Identification of Nonculturable Magnetotactic Bacteria

article

Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes.

scientific article published in February 1998

Phylum BVIII. Nitrospirae phy. nov

article

Planctomycetes do possess a peptidoglycan cell wall

scientific article

Polyphasic Characterization of the Genus Leptothrix: New Descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and Emended Description of Leptothrix cholodnii emend

article

Pseudomonas benzenivorans sp. nov. and Pseudomonas saponiphila sp. nov., represented by xenobiotics degrading type strains

scientific article

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

scientific article published on 11 February 2013

Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., com

scientific article

The Genera Desulfitobacterium and Desulfosporosinus: Taxonomy

article

The Genera Leptothrix and Sphaerotilus

article

The Genus Magnetospirillum gen. nov. Description of Magnetospirillum gryphiswaldense sp. nov. and Transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov.

scientific article (publication date: October 1991)

The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments

scientific article

The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.

scientific article

Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4.

scientific article

Valid publication of the names Caecibacterium and Caecibacterium sporoformans

article

Vulcanibacillus modesticaldus gen. nov., sp. nov., a strictly anaerobic, nitrate-reducing bacterium from deep-sea hydrothermal vents.

scientific article

Vulcanithermus mediatlanticus gen. nov., sp. nov., a novel member of the family Thermaceae from a deep-sea hot vent.

scientific article

rRNA-Targeted Oligonucleotide Probes for the Identification of Genuine and Former Pseudomonads

article

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