List of works - Daniel Lang

A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens

scholarly article

A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value

scientific article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

scientific article published on 23 July 2008

A uniquely high number offtsZ genes in the mossPhyscomitrella patens

article

An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

scientific article (publication date: 2 August 2007)

Auxin-binding proteins without KDEL sequence in the moss Funaria hygrometrica

scientific article published on 02 October 2009

Dating the early evolution of plants: detection and molecular clock analyses of orthologs.

scientific article published on 26 June 2007

Emerging functions for plant MAP kinase phosphatases.

scientific article published on 06 May 2010

Erratum to: An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

scientific article published on 8 September 2016

Exploring plant biodiversity: the Physcomitrella genome and beyond.

scientific article

Generation-biased gene expression in a bryophyte model system

scientific article

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance. ⬇️

scientific article

Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat

scientific article published on 17 August 2018

Hidden variation in polyploid wheat drives local adaptation

scientific article published on 09 August 2018

Host Cell Proteome of Physcomitrella patens Harbors Proteases and Protease Inhibitors under Bioproduction Conditions

scientific article published on 04 October 2018

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

scientific article

Identification of Targets and Interaction Partners of Arginyl-tRNA Protein Transferase in the Moss Physcomitrella patens

scientific article published on 11 April 2016

Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation

scientific article

Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis

scientific article

Large-scale analysis of 73 329 physcomitrella plants transformed with different gene disruption libraries: production parameters and mutant phenotypes

scientific article

Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions

2014 scientific article

Mass-spectrometry-based draft of the Arabidopsis proteome

scientific article published on 11 March 2020

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

scientific article published on 26 September 2009

Origin and function of stomata in the moss Physcomitrella patens ⬇️

scientific article published on 28 November 2016

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

scientific article

PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins

article

Predicted protein-protein interactions in the moss Physcomitrella patens: a new bioinformatic resource

scientific article

Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens

scientific article

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis

scientific article published on 09 October 2020

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

scientific article (publication date: 23 July 2013)

Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses

scientific article published on May 2005

Selfing in haploid plants and efficacy of selection: codon usage bias in the model moss Physcomitrella patens

scientific article

Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss.

scientific article published on 2 October 2015

Stomatal guard cells co-opted an ancient ABA-dependent desiccation survival system to regulate stomatal closure

scientific article published on 19 March 2015

TSSi--an R package for transcription start site identification from 5' mRNA tag data.

scientific article

Targeted gene knockouts reveal overlapping functions of the five Physcomitrella patens FtsZ isoforms in chloroplast division, chloroplast shaping, cell patterning, plant development, and gravity sensing

scientific article published on 10 September 2009

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

article

The Ectocarpus Genome and Brown Algal Genomics

article published in 2012

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

scientific article

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

scientific article published on 22 April 2018

The Polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens

scientific article

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens ⬇️

scientific article published on 27 March 2018

The plant ontology as a tool for comparative plant anatomy and genomic analyses

scientific article published on 5 December 2012

The transcriptional landscape of polyploid wheat

scientific article

Tracing the ancestry of modern bread wheats

scientific article published on 01 May 2019

ppdb: plant promoter database version 3.0.

scientific article published on 4 November 2013

List of works by Daniel Lang

A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens

A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

A uniquely high number offtsZ genes in the mossPhyscomitrella patens

An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

Auxin-binding proteins without KDEL sequence in the moss Funaria hygrometrica

Dating the early evolution of plants: detection and molecular clock analyses of orthologs.

Emerging functions for plant MAP kinase phosphatases.

Erratum to: An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

Exploring plant biodiversity: the Physcomitrella genome and beyond.

Generation-biased gene expression in a bryophyte model system

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance. ⬇️

Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat

Hidden variation in polyploid wheat drives local adaptation

Host Cell Proteome of Physcomitrella patens Harbors Proteases and Protease Inhibitors under Bioproduction Conditions

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

Identification of Targets and Interaction Partners of Arginyl-tRNA Protein Transferase in the Moss Physcomitrella patens

Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation

Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis

Large-scale analysis of 73 329 physcomitrella plants transformed with different gene disruption libraries: production parameters and mutant phenotypes

Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions

Mass-spectrometry-based draft of the Arabidopsis proteome

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

Origin and function of stomata in the moss Physcomitrella patens ⬇️

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins

Predicted protein-protein interactions in the moss Physcomitrella patens: a new bioinformatic resource

Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses

Selfing in haploid plants and efficacy of selection: codon usage bias in the model moss Physcomitrella patens

Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss.

Stomatal guard cells co-opted an ancient ABA-dependent desiccation survival system to regulate stomatal closure

TSSi--an R package for transcription start site identification from 5' mRNA tag data.

Targeted gene knockouts reveal overlapping functions of the five Physcomitrella patens FtsZ isoforms in chloroplast division, chloroplast shaping, cell patterning, plant development, and gravity sensing

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

The Ectocarpus Genome and Brown Algal Genomics

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

The Polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens

The barley pan-genome reveals the hidden legacy of mutation breeding

The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens ⬇️

The plant ontology as a tool for comparative plant anatomy and genomic analyses

The transcriptional landscape of polyploid wheat

Tracing the ancestry of modern bread wheats

ppdb: plant promoter database version 3.0.