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List of works by Richard Sandstrom

A comparative encyclopedia of DNA elements in the mouse genome

scientific article

A genome-wide map of adeno-associated virus-mediated human gene targeting

scientific article published on 5 October 2014

A microbial profiling method for the human microbiota using high-throughput sequencing.

scientific article published on January 2013

A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development

scientific article published on 11 September 2012

An encyclopedia of mouse DNA elements (Mouse ENCODE).

scientific article

An expansive human regulatory lexicon encoded in transcription factor footprints

scientific article

BEDOPS: high-performance genomic feature operations

scientific article

CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus

scientific article

Cell-of-origin chromatin organization shapes the mutational landscape of cancer

scientific article published on February 2015

Circuitry and dynamics of human transcription factor regulatory networks

scientific article published on 5 September 2012

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

scientific article

Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüppel-like factors

scientific article

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

scientific article (publication date: 9 October 2009)

Conservation of trans-acting circuitry during mammalian regulatory evolution

scientific article

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.

scientific article

Cross-species Analyses Unravel the Complexity of H3K27me3 and H4K20me3 in the Context of Neural Stem Progenitor Cells.

scientific article published on 03 May 2016

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements

scientific article published on 28 February 2015

DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements

scientific article

Developmental fate and cellular maturity encoded in human regulatory DNA landscapes

scientific article published on August 2013

Domains of genome-wide gene expression dysregulation in Down's syndrome.

scientific article published in April 2014

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

scientific article published on 11 May 2011

Epigenetic regulation by chromatin activation mark H3K4me3 in primate progenitor cells within adult neurogenic niche

scientific article

Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo

scholarly article published in Nature Genetics

Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification

scientific article

Functionally and phenotypically distinct subpopulations of marrow stromal cells are fibroblast in origin and induce different fates in peripheral blood monocytes

scientific article

Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.

scientific article

Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution

scientific article

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

scientific article published on 22 March 2009

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.

scientific article published on 13 February 2019

Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma

scientific article published on 01 March 2019

Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo

scientific article

Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome.

scientific article

Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana

scientific article published on 15 September 2014

Molecular targets of chromatin repressive mark H3K9me3 in primate progenitor cells within adult neurogenic niches.

scientific article

Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

scientific article

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

scientific article published in April 2015

Probing DNA shape and methylation state on a genomic scale with DNase I.

scientific article published on April 2013

Resolving the complexity of the human genome using single-molecule sequencing

scientific article

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

scientific article

Systematic localization of common disease-associated variation in regulatory DNA

scientific article

The accessible chromatin landscape of the human genome

scientific article

The birth of a human-specific neural gene by incomplete duplication and gene fusion

scientific article published on 09 March 2017

Widespread plasticity in CTCF occupancy linked to DNA methylation

scientific article

Zebrafish globin switching occurs in two developmental stages and is controlled by the LCR.

scientific article

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