List of works by Nicholas Putnam

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation

article

Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis

scientific article

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage ⬇️

scientific article published on 4 February 2016

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

scientific article

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

scientific article published in January 2007

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

scientific article published on 9 March 2006

Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes

scientific article (publication date: 5 October 2011)

Deeply conserved synteny resolves early events in vertebrate evolution

scientific article published on 20 April 2020

Domain shuffling and the evolution of vertebrates

scientific article published on 14 May 2009

Erratum: Corrigendum: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

scholarly article published in Nature Biotechnology

Evolution of the perlecan/HSPG2 gene and its activation in regenerating Nematostella vectensis

scientific article published on 15 April 2015

Evolutionary profiling reveals the heterogeneous origins of classes of human disease genes: implications for modeling disease genetics in animals

scientific article

Genome evolution in the allotetraploid frog Xenopus laevis

scientific article

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

scientific article

Genome sequences of two Phytophthora species responsible for Sudden Oak Death and Soybean Root Rot provide novel insights into their evolutionary origins and mechanisms of pathogenesis

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

scientific article

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

scientific article

Hemichordate genomes and deuterostome origins

scientific article

Insights into bilaterian evolution from three spiralian genomes

scientific article

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

scientific article

Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis

scientific article

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

scientific article

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

scientific article

Reverse methanogenesis: testing the hypothesis with environmental genomics

scientific article

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

scientific article

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

The Amphimedon queenslandica genome and the evolution of animal complexity ⬇️

scientific article

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

scientific article

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

scientific article

The Trichoplax genome and the nature of placozoans

scientific article

The amphioxus genome and the evolution of the chordate karyotype

scientific article

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

scientific article

The dynamic genome of Hydra

scientific article

The genome of the Western clawed frog Xenopus tropicalis

scientific article

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

scientific article

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution

scientific article

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution

scientific article

Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida

scientific article

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

scientific article

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