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List of works by Cheong Xin Chan

A genomic view of the reef-building coral Porites lutea and its microbial symbionts

scientific article published on 23 September 2019

A new species of Burkholderia isolated from sugarcane roots promotes plant growth

scientific article

A phylogenomic approach for studying plastid endosymbiosis.

scientific article published in January 2008

A word-oriented approach to alignment validation

scientific article published on 22 February 2005

ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE().

scientific article

Active host response to algal symbionts in the sea slug Elysia chlorotica.

scientific article published on 5 April 2018

Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer

scientific article published on July 2016

Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems

scientific article (publication date: April 2012)

Analysis of horizontal genetic transfer in red algae in the post-genomics age.

scientific article

Analysis of the draft genome of the red seaweed Gracilariopsis chorda provides insights into genome size evolution in Rhodophyta.

scientific article published on 23 April 2018

Are protein domains modules of lateral genetic transfer?

scientific article

Biological Intuition in Alignment-Free Methods: Response to Posada

article

Biotic interactions as drivers of algal origin and evolution.

scientific article

Building Consensus around the Assessment and Interpretation of Symbiodiniaceae Diversity

scholarly article

Clustering evolving proteins into homologous families

scientific article

Commonly misunderstood parameters of NCBI BLAST and important considerations for users

scientific article published on 01 August 2019

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

scientific article published on 13 April 2021

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

scientific article published in Scientific Reports

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

scientific article

Deciphering the nature of the coral-Chromera association

scientific article published on 10 January 2018

Detecting recombination in evolving nucleotide sequences

scientific article

Dual RNA-seq analyses of a coral and its native symbiont during the establishment of symbiosis

scientific article published on 27 August 2020

Endosymbiotic and horizontal gene transfer in microbial eukaryotes: Impacts on cell evolution and the tree of life

scientific article published on March 2012

Erratum: Publisher Correction: genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

scientific article published on 23 August 2018

Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes

scientific article published on 01 February 2020

Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa

scientific article published on 03 July 2013

Foreign gene recruitment to the fatty acid biosynthesis pathway in diatoms.

scientific article published on September 2013

Genome Evolution of Coral Reef Symbionts as Intracellular Residents

scientific article published on 10 May 2019

Genome of the red alga Porphyridium purpureum

scientific article

Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions

scientific article published on 24 May 2020

Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes

scientific article published in 2022

Inferring phylogenies of evolving sequences without multiple sequence alignment.

scientific article

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

scientific article

Lateral Transfer of Genes and Gene Fragments in Staphylococcus Extends beyond Mobile Elements ⬇️

scientific article published on May 27, 2011

Lateral transfer of genes and gene fragments in prokaryotes

scientific article

MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).

scientific article

Molecular phylogenetics before sequences: oligonucleotide catalogs as k-mer spectra

scientific article (publication date: 2014)

Next-generation phylogenomics ⬇️

scientific article (publication date: 22 January 2013)

Non-random sharing of Plantae genes

scientific article

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R.

scientific article

Plastid origin and evolution: new models provide insights into old problems

scientific article (publication date: April 2011)

Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids

scientific article

Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism

scientific article

Recapitulating phylogenies using k-mers: from trees to networks

scientific article published on 29 November 2016

Red and green algal monophyly and extensive gene sharing found in a rich repertoire of red algal genes

scientific article

Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution

scientific article

Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events.

scientific article published on January 2017

Selection of reference genes for transcript profiling of <i>Sargassum polycystum</i> by quantitative real‐time polymerase chain reaction

scientific article published in 2018

Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium.

scientific article

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

article published in 2018

Symbiodiniumgenomes reveal adaptive evolution of functions related to symbiosis

The Algal Revolution

scientific article

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome.

scientific article

Trends in seaweed research

scientific article published on 10 March 2006

Whole-genome duplication in an algal symbiont bolsters coral heat tolerance

scientific article published on 19 July 2024

k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank

scientific article published on 20 November 2018

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