List of works - Christine G Elsik

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

scientific article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Analysis of Sus scrofa liver proteome and identification of proteins differentially expressed between genders, and conventional and genetically enhanced lines

scientific article

Apollo: Democratizing genome annotation

scientific article from PLOS Computational Biology

Bovine Genome Database: Tools for Mining the Bos taurus Genome

scientific article published on 01 January 2018

Bovine Genome Database: integrated tools for genome annotation and discovery

scientific article

Bovine Genome Database: new annotation tools for a new reference genome

scientific article published on 01 January 2020

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome

scientific article

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

scientific article (publication date: 19 November 2010)

Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction

scientific article

Community annotation: procedures, protocols, and supporting tools.

scientific article published on 25 October 2006

Comparative genomics of plant chromosomes

scientific article

Computational and transcriptional evidence for microRNAs in the honey bee genome

scientific article published on January 2007

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

scientific article

Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus ⬇️

scientific article published on 20 March 2013

Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation

scientific article

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

article

Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation

scientific article published on 18 August 2009

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile) ⬇️

scientific article

Draft genome of the red harvester ant Pogonomyrmex barbatus

scientific article

Families of clustered microsatellites in a conifer genome

scientific article

Finding the missing honey bee genes: lessons learned from a genome upgrade

scientific article

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

scientific article

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

scientific article

Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera

scientific article

Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing

scientific article published on 31 May 2016

Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome.

scientific article published on 4 October 2017

Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects

scientific article published on 01 January 2018

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

scientific article

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

scientific article

Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

scientific article published on 01 January 2022

Identification of REST targets in the Xenopus tropicalis genome

scientific article published on 14 May 2015

JBrowse: a dynamic web platform for genome visualization and analysis

scientific article published on 12 April 2016

Low-copy microsatellite markers for Pinus taeda L

scientific article published on 01 June 2000

MaizeGDB 2018: the maize multi-genome genetics and genomics database

article

Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure

scientific article published on 16 May 2007

Microsatellite analysis of Pinus taeda L. in Zimbabwe

scientific article

Molecular traces of alternative social organization in a termite genome.

scientific article

Patterns of conservation and change in honey bee developmental genes

scientific article

Prediction of Protein Interdomain Linker Regions by a Nonstationary Hidden Markov Model

Prediction of protein interdomain linker regions by a hidden Markov model

scientific article published on 3 March 2005

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

scientific article

RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus ⬇️

scientific article

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

scientific article published on May 2013

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

scientific article

The genomes of two key bumblebee species with primitive eusocial organization ⬇️

scientific article

The pea aphid genome sequence brings theories of insect defense into question

scientific article

Toward a data infrastructure for the Plant Cell Atlas

scientific article published on 6 October 2022

Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis

scientific article

Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito, Aedes albopictus ⬇️

scientific article published on June 2013

Unlocking the bovine genome.

scientific article

Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome

scientific article published on 14 June 2020

Web Apollo: a web-based genomic annotation editing platform

scientific article (publication date: 30 August 2013)

List of works by Christine G Elsik

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Analysis of Sus scrofa liver proteome and identification of proteins differentially expressed between genders, and conventional and genetically enhanced lines

Apollo: Democratizing genome annotation

Apollo: Democratizing genome annotation

Bovine Genome Database: Tools for Mining the Bos taurus Genome

Bovine Genome Database: integrated tools for genome annotation and discovery

Bovine Genome Database: new annotation tools for a new reference genome

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction

Community annotation: procedures, protocols, and supporting tools.

Comparative genomics of plant chromosomes

Computational and transcriptional evidence for microRNAs in the honey bee genome

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus ⬇️

Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile) ⬇️

Draft genome of the red harvester ant Pogonomyrmex barbatus

Families of clustered microsatellites in a conifer genome

Finding the missing honey bee genes: lessons learned from a genome upgrade

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera

Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing

Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome.

Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

Identification of REST targets in the Xenopus tropicalis genome

JBrowse: a dynamic web platform for genome visualization and analysis

Low-copy microsatellite markers for Pinus taeda L

MaizeGDB 2018: the maize multi-genome genetics and genomics database

Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure

Microsatellite analysis of Pinus taeda L. in Zimbabwe

Molecular traces of alternative social organization in a termite genome.

Patterns of conservation and change in honey bee developmental genes

Prediction of Protein Interdomain Linker Regions by a Nonstationary Hidden Markov Model

Prediction of protein interdomain linker regions by a hidden Markov model

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus ⬇️

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

The genome of the sea urchin Strongylocentrotus purpuratus

The genome sequence of taurine cattle: a window to ruminant biology and evolution

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

The genomes of two key bumblebee species with primitive eusocial organization ⬇️

The pea aphid genome sequence brings theories of insect defense into question

Toward a data infrastructure for the Plant Cell Atlas

Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis

Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito, Aedes albopictus ⬇️

Unlocking the bovine genome.

Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome

Web Apollo: a web-based genomic annotation editing platform