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List of works by Liang-Hu Qu

27-Hydroxycholesterol increases Myc protein stability via suppressing PP2A, SCP1 and FBW7 transcription in MCF-7 breast cancer cells

scientific article published on 14 October 2016

A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes

scientific article published on 11 January 2007

A contig-based strategy for the genome-wide discovery of microRNAs without complete genome resources.

scientific article

A group of tissue-specific microRNAs contribute to the silencing of CUX1 in different cell lineages during development

scientific article published on 16 April 2018

A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes

scientific article

A novel gene organization: intronic snoRNA gene clusters from Oryza sativa

scientific article

A unique insertion in the CP1 domain of Giardia lamblia leucyl-tRNA synthetase

scientific article published in February 2009

An LTR retrotransposon-derived lncRNA interacts with RNF169 to promote homologous recombination

scientific article published on 05 September 2019

Animal-to-human SARS-associated coronavirus transmission?

scientific article published on May 2004

Application of microRNA gene resources in the improvement of agronomic traits in rice

scientific article

Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia

scientific article

Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii

scientific article published on 20 July 2015

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data

scientific article (publication date: 4 January 2017)

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

scientific article

Characterization and functional analysis of a novel double-guide C/D box snoRNA in the fission yeast

scientific article published on 8 January 2007

Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill

scientific article published in November 2003

Characterization of three novel imprinted snoRNAs from mouse Irm gene

scientific article published on 4 January 2006

Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei

scientific article published on 23 May 2013

Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes in Ascomycota.

scientific article

Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.

scientific article published on 31 August 2012

Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers

scientific article

DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data

scientific article

Different expression strategy: multiple intronic gene clusters of box H/ACA snoRNA in Drosophila melanogaster

scientific article

Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets

scientific article

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data

scientific article

Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill as examined by direct 16S rRNA gene sequence retrieval

scientific article

Down-regulated miR-331-5p and miR-27a are associated with chemotherapy resistance and relapse in leukaemia

scientific article

Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation

scientific article published on February 2012

Evaluating the evolution of G. lamblia based on the small nucleolar RNAs identified from Archaea and unicellular eukaryotes

scientific article published on 27 March 2009

Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs

scientific article published on February 2017

Exploration of pairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes

scientific article published on 24 March 2007

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

article

Expression profiles of microRNAs encoded by the oncogenic Marek's disease virus reveal two distinct expression patterns in vivo during different phases of disease.

scientific article published on 9 December 2010

Extremely low genetic diversity indicating the endangered status of Ranodon sibiricus (Amphibia: Caudata) and implications for phylogeography

scientific article

Genetic diversity of small eukaryotes from the coastal waters of Nansha Islands in China

scientific article published in November 2004

Genetic variation of Cordyceps sinensis, a fruit-body-producing entomopathogenic species from different geographical regions in China

scientific article

Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs

scientific article

Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs

scientific article

Genome-wide analysis of small RNA and novel MicroRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach

scientific article

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus

scientific article

Genome-wide evolutionary analysis of the noncoding RNA genes and noncoding DNA of Paramecium tetraurelia

scientific article published on 13 February 2009

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice

scientific article

Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters

scientific article published on May 2008

High diversity of endophytic fungi from the pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivation-independent approach

scientific article published in August 2005

High glucose down-regulates miR-29a to increase collagen IV production in HK-2 cells

scientific journal article

Identification and functional analysis of 20 Box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe

scientific article (publication date: 22 April 2005)

Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana

scientific article

Identification of 20 microRNAs from Oryza sativa

scientific article published on 12 March 2004

Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia

scientific article published in March 2005

Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library

scientific article published in February 2004

Identification of novel chicken microRNAs and analysis of their genomic organization

scientific article

Insulin-like growth factor-1 receptor is regulated by microRNA-133 during skeletal myogenesis

scientific article

Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types

scientific article published on 27 April 2016

Leachates from municipal solid waste disposal sites harbor similar, novel nitrogen-cycling bacterial communities

scientific article

Liver-enriched transcription factors regulate microRNA-122 that targets CUTL1 during liver development.

scientific article

Long non-coding RNAs link extracellular matrix gene expression to ischemic cardiomyopathy.

scientific article published on 24 August 2016

Maintaining a conserved methylation in plant and insect U2 snRNA through compensatory mutation by nucleotide insertion

scientific article published in October 2005

Marek's disease virus-encoded analog of microRNA-155 activates the oncogene c-Myc by targeting LTBP1 and suppressing the TGF-β signaling pathway

scientific article published on 19 December 2014

MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis

scientific article

MicroRNA patterns associated with clinical prognostic parameters and CNS relapse prediction in pediatric acute leukemia

scientific article

MicroRNA-122 supports robust innate immunity in hepatocytes by targeting the RTKs/STAT3 signaling pathway

scientific article published on 08 February 2019

MicroRNA-195 plays a tumor-suppressor role in human glioblastoma cells by targeting signaling pathways involved in cellular proliferation and invasion

scientific article published on 4 January 2012

MicroRNA-21 promotes cell proliferation and down-regulates the expression of programmed cell death 4 (PDCD4) in HeLa cervical carcinoma cells

scientific article published on 12 August 2009

Mitogenomic perspectives on the origin and phylogeny of living amphibians

scientific article

Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill

scientific article

Oridonin induces autophagy via inhibition of glucose metabolism in p53-mutated colorectal cancer cells

scientific article published on 23 February 2017

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

scientific article published on 21 July 2013

Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis

scientific article published on 01 February 2015

Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis.

scientific article

Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill

scientific article

Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae)

scientific article (publication date: 9 May 2006)

Phylogeography of a widespread terrestrial vertebrate in a barely-studied Palearctic region: green toads (Bufo viridis subgroup) indicate glacial refugia in Eastern Central Asia

scientific article

Plant noncoding RNA gene discovery by "single-genome comparative genomics".

scientific article

Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs

scientific article published on 01 January 2022

Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei

scientific article

Pseudogenes are not pseudo any more

scientific article published on January 2012

RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data

scientific article

RTL-P: a sensitive approach for detecting sites of 2'-O-methylation in RNA molecules

scientific article

Rapid birth-and-death evolution of imprinted snoRNAs in the Prader-Willi syndrome locus: implications for neural development in Euarchontoglires

scientific article (publication date: 2014)

Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development

scientific article

Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast.

scientific article

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights.

scientific article

StarScan: a web server for scanning small RNA targets from degradome sequencing data

scientific article

Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia

scientific article published on 27 September 2008

Synthesis, characterization, DNA-binding and cleavage studies of [Ru(bpy)2(actatp)]2+ and [Ru(phen)2(actatp)]2+ (actatp=acenaphthereno[1,2-b]-1,4,8,9-tetraazariphenylence).

scientific article published in October 2003

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The Schizosaccharomyces pombe mgU6-47 gene is required for 2'-O-methylation of U6 snRNA at A41.

scientific article

The complete mitochondrial genome of a relic salamander, Ranodon sibiricus (Amphibia: Caudata) and implications for amphibian phylogeny

scientific article published in September 2003

The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians

scientific article

The complete mitochondrial genome of the Chinese giant salamander, Andrias davidianus (Amphibia: Caudata).

scientific article published in June 2003

The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa

scientific article

The rat mitochondrial Ori L encodes a novel small RNA resembling an ancestral tRNA.

scientific article

The ribosomal protein rpl26 promoter is required for its 3' sense terminus ncRNA transcription in Schizosaccharomyces pombe, implicating a new transcriptional mechanism for ncRNAs.

scientific article

Translational repression of cyclin D3 by a stable G-quadruplex in its 5' UTR: implications for cell cycle regulation

scientific article published on August 2012

Triggering Fbw7-mediated proteasomal degradation of c-Myc by oridonin induces cell growth inhibition and apoptosis.

scientific article published on 2 March 2012

Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase

scientific article

Virus-encoded miR-155 ortholog is an important potential regulator but not essential for the development of lymphomas induced by very virulent Marek's disease virus

scientific article published on 20 October 2013

Wnt/β-catenin pathway transactivates microRNA-150 that promotes EMT of colorectal cancer cells by suppressing CREB signaling.

scientific article published on 07 June 2016

[Radiation sensitizing effect of anti HPV16E6-ribozyme on cervical carcinoma cell line]

scientific article published on 01 February 2002

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data

scientific article published on 20 November 2015

deepBase: a database for deeply annotating and mining deep sequencing data

scientific article

miR-125b, a target of CDX2, regulates cell differentiation through repression of the core binding factor in hematopoietic malignancies

scientific article published on 8 September 2011

ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.

scientific article

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

scientific article

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

scientific article

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.

scientific article

tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data

scientific article published on 01 January 2022

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