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List of works by Mark Johnston

"Calling cards" for DNA-binding proteins in mammalian cells

scientific article published on 3 January 2012

'Calling Cards' method for high-throughput identification of targets of yeast DNA-binding proteins.

scientific article published in January 2008

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

scientific article (publication date: 10 February 2000)

A genetic method for defining DNA-binding domains: application to the nuclear receptor NGFI-B

scientific article published on October 1993

A glucose sensor in Candida albicans

scientific article

A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription

scientific article

After the duplication: gene loss and adaptation in Saccharomyces genomes

scientific article published on December 2005

Associating protein activities with their genes: rapid identification of a gene encoding a methylglyoxal reductase in the yeast Saccharomyces cerevisiae

scientific article

Asymmetric signal transduction through paralogs that comprise a genetic switch for sugar sensing in Saccharomyces cerevisiae

scientific article published on 31 August 2009

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics

scientific article published on 25 August 2009

Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: regulationby glucose and chromatin structure.

scientific article published on March 1999

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

scientific article

COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression

scientific article

COMPASS: a complex of proteins associated with a trithorax-related SET domain protein

scientific article

Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins

scientific article published on 6 April 2011

Calling cards for DNA-binding proteins.

scientific article published on 10 July 2007

Comparative genomics of protoploid Saccharomycetaceae

scientific article

EVOLUTION: Heirlooms in the Attic

scientific article published in Science

Editorial Principles and Practices of GENETICS: A Peer-Edited Journal of the Genetics Society of America ⬇️

scientific article published on November 1, 2012

Erratum for Schloss et al., "Support Science by Publishing in Scientific Society Journals".

scientific article

Expression of the SUC2 gene of Saccharomyces cerevisiae is induced by low levels of glucose

scientific article published on 01 February 1997

Feasting, fasting and fermenting. Glucose sensing in yeast and other cells

scientific article

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

scientific article

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

scientific article (publication date: 6 August 1999)

Functional profiling of the Saccharomyces cerevisiae genome

scientific article (publication date: 25 July 2002)

G3, GENETICS, and the GSA: Two Journals, One Mission

scientific article published on September 2011

Gene disruption

scientific article published in January 2002

Genetic Analysis of Signal Generation by the Rgt2 Glucose Sensor of

scholarly article by Peter Poulsen published in July 2018

Genomics. A crisis in postgenomic nomenclature

scientific article

Global proteomic analysis of S. cerevisiae (GPS) to identify proteins required for histone modifications

scientific article published in January 2004

Glucose as a hormone: receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae

scientific article published in February 2005

Glucose sensing and signaling by two glucose receptors in the yeast Saccharomyces cerevisiae

scientific article

Glucose sensing and signaling in Saccharomyces cerevisiae through the Rgt2 glucose sensor and casein kinase I.

scientific article

Grass-roots genomics

Grr1 of Saccharomyces cerevisiae is connected to the ubiquitin proteolysis machinery through Skp1: coupling glucose sensing to gene expression and the cell cycle

scientific article

Handing off the Torch

scientific article published on 01 December 2020

How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose

scientific article published on 16 October 2004

Identifying DNA-Binding Sites and Analyzing DNA-Binding Domains Using a Yeast Selection System

Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network

article

Integration of transcriptional and posttranslational regulation in a glucose signal transduction pathway in Saccharomyces cerevisiae

scientific article published in January 2006

Isolation and characterization of the ZWF1 gene of Saccharomyces cerevisiae, encoding glucose-6-phosphate dehydrogenase

scientific article

Isolation of yeast artificial chromosomes free of endogenous yeast chromosomes: construction of alternate hosts with defined karyotypic alterations

scientific article

Joshua Lederberg on Bacterial Recombination

scientific article published on June 2016

Large-scale screening of yeast mutants for sensitivity to the IMP dehydrogenase inhibitor 6-azauracil

scientific article published on February 2004

Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life

scientific article

Life with 6000 genes

scientific article

Linking DNA-binding proteins to their recognition sequences by using protein microarrays

scientific article

Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation

scientific article published on 13 August 2009

Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.

scientific article

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

scientific article

Opening up Peer Review

scientific article published on 01 November 2020

Presenting GENETICS: honoring the past, embracing the future

scientific article

Proteomics and genomics Presidential preference, protein purpose

Reclaiming responsibility for setting standards

scientific article published on February 2009

Regulated expression of the GAL4 activator gene in yeast provides a sensitive genetic switch for glucose repression

scientific article

Regulation of sugar transport and metabolism by the Candida albicans Rgt1 transcriptional repressor

scientific article published in October 2007

Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae

scientific article published on February 2004

Remarkably ancient balanced polymorphisms in a multi-locus gene network

scientific article (publication date: 4 March 2010)

Renewing GENETICS

scientific article published on September 2009

Retrotransposon profiling of RNA polymerase III initiation sites

scientific article published on 27 January 2012

SUMOylation regulates the SNF1 protein kinase

scientific article

Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae

scientific article

Specialized sugar sensing in diverse fungi

scientific article published on 26 February 2009

Specificity and regulation of DNA binding by the yeast glucose transporter gene repressor Rgt1

scientific article

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis

scientific article published in July 2001

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

scientific article

The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.

scientific article

The Escherichia coli proB gene corrects the proline auxotrophy of Saccharomyces cerevisiae pro1 mutants

article

The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p

scientific article

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

scientific article

The promise of functional genomics: completing the encyclopedia of a cell

scientific article published in October 2004

The yeast genome: on the road to the Golden Age.

scientific article

Towards a complete understanding of how a simple eukaryotic cell works

scientific article published on 01 July 1996

Two Glucose-sensing Pathways Converge on Rgt1 to Regulate Expression of Glucose Transporter Genes inSaccharomyces cerevisiae

scientific article published in Journal of Biological Chemistry

Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression

scientific article

Unusual composition of a yeast chromosome arm is associated with its delayed replication

scientific article published on 10 July 2009

Yeast genome duplication was followed by asynchronous differentiation of duplicated genes

scientific article

YeastBook: an encyclopedia of the reference eukaryotic cell

scientific article published on November 2011

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