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List of works by Tanja Stadler

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Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

scientific article
Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity

scientific article (publication date: 12 November 2010)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019
Mammalian phylogeny reveals recent diversification rate shifts

scientific article (publication date: 12 April 2011)
Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

scientific article published in 2012
The fossilized birth-death process for coherent calibration of divergence-time estimates

scientific article
On incomplete sampling under birth-death models and connections to the sampling-based coalescent

scientific article
Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

scientific article (publication date: 7 April 2012)
Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

scientific article published on December 17, 2012
Sampling-through-time in birth-death trees

scientific article
Estimating the basic reproductive number from viral sequence data

scientific article
Total-Evidence Dating under the Fossilized Birth-Death Process

scientific article
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration

scientific article
Simulating Trees with a Fixed Number of Extant Species

scientific article published on April 11, 2011
Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

scientific article published on 30 September 2010
The contrasting phylodynamics of human influenza B viruses.

scientific article
Inferring speciation and extinction rates under different sampling schemes

scientific article published on 11 April 2011
Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods

scientific article (publication date: 19 March 2013)
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

scientific article published on 26 February 2014
Inferring epidemic contact structure from phylogenetic trees

scientific article published on 8 March 2012
Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins.

scientific article
Recovering speciation and extinction dynamics based on phylogenies

scientific article published on May 13, 2013
Sampling trees from evolutionary models

scientific article published on 28 May 2010
A new method for handling missing species in diversification analysis applicable to randomly or nonrandomly sampled phylogenies

scientific article
Epiphytic leafy liverworts diversified in angiosperm-dominated forests

scientific article
Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission

scientific article published on October 1, 2013
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015
Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

scientific article
Bayesian Inference of Species Networks from Multilocus Sequence Data

scientific article
Inferring speciation and extinction processes from extant species data

scientific article (publication date: 27 September 2011)
Birth–death models and coalescent point processes: The shape and probability of reconstructed phylogenies

scientific article published on October 21, 2013
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016
How Can We Improve Accuracy of Macroevolutionary Rate Estimates?

scientific article published on 08 September 2012
The Structured Coalescent and its Approximations

scientific article
On age and species richness of higher taxa

scientific article
Branch lengths on birth-death trees and the expected loss of phylogenetic diversity.

scientific article published on 24 August 2011
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology

article
Age-dependent speciation can explain the shape of empirical phylogenies

scientific article
Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing

scientific article
Taming the BEAST - A community teaching material resource for BEAST 2.

scientific article
Fossils and a large molecular phylogeny show that the evolution of species richness, generic diversity, and turnover rates are disconnected.

scientific article
On the need for mechanistic models in computational genomics and metagenomics

scientific article (publication date: 2013)
A method for investigating relative timing information on phylogenetic trees

scientific article
The abrupt climate change at the Eocene-Oligocene boundary and the emergence of South-East Asia triggered the spread of sapindaceous lineages

scientific article (publication date: July 2013)
Vaccination of dogs in an African city interrupts rabies transmission and reduces human exposure

scientific article published in December 2017
Assessment of Overlap of Phylogenetic Transmission Clusters and Communities in Simple Sexual Contact Networks: Applications to HIV-1.

scientific article published on 10 February 2016
Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models

scientific article
Testing the spatial and temporal framework of speciation in an ancient lake species flock: the leech genus Dina (Hirudinea: Erpobdellidae) in Lake Ohrid

article
Origin, imports and exports of HIV-1 subtype C in South Africa: A historical perspective

scientific article published on 12 July 2016
Lineages-through-time plots of neutral models for speciation

scientific article published on 27 September 2008

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