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List of works by Matthieu Muffato

Advances and Applications in the Quest for Orthologs

scientific article published on 01 October 2019

Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.

scientific article

Ensembl 2012

scientific article

Ensembl 2013

scientific article

Ensembl 2014

scientific article

Ensembl 2015

scientific article (publication date: 2015)

Ensembl 2016

scientific article

Ensembl 2017

scientific article

Ensembl 2018.

scientific article published on 16 November 2017

Ensembl 2019

scientific article published on 01 January 2019

Ensembl 2020

scientific article published on 01 January 2020

Ensembl 2021

scientific article published on 02 November 2020

Ensembl 2022

scientific article published on 19 October 2021

Ensembl Genomes 2020-enabling non-vertebrate genomic research

scientific article published on 01 January 2020

Ensembl comparative genomics resources

scientific article published on 20 February 2016

Ensembl comparative genomics resources

scientific article published on 2 May 2016

Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome

scientific article published in Nature

Gearing up to handle the mosaic nature of life in the quest for orthologs

scientific article published on 30 August 2017

GeneSeqToFamily: the Ensembl Compara GeneTrees pipeline as a Galaxy workflow

article

Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics.

scientific article

Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes

scientific article

Genomicus: five genome browsers for comparative genomics in eukaryota

scientific article

Gibbon genome and the fast karyotype evolution of small apes

scientific article

Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time

scientific article published on February 2008

PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees.

scientific article

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

scientific article (publication date: 3 December 2010)

Publisher Correction: The tuatara genome reveals ancient features of amniote evolution

scientific article published on 18 August 2020

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

scientific article published in July 2015

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

scientific article published on 21 March 2018

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

scientific article

Standardized benchmarking in the quest for orthologs

scientific article (publication date: 4 April 2016)

Ten Years of Collaborative Progress in the Quest for Orthologs

scientific article published on 2 April 2021

The 3D organization of chromatin explains evolutionary fragile genomic regions

scientific article published on 01 March 2015

The Quest for Orthologs benchmark service and consensus calls in 2020

scientific article published on 06 May 2020

The comparative genomics and complex population history of baboons

scientific article published on 30 January 2019

The tuatara genome reveals ancient features of amniote evolution

scientific article published on 5 August 2020

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

scientific article published on 8 December 2019

TreeFam v9: a new website, more species and orthology-on-the-fly

scientific article (publication date: 2014)

ncRNA orthologies in the vertebrate lineage

scientific article published on 15 March 2016

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