List of works - Stephen Ficklin

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

scientific article

A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa

scientific article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Chestnut resistance to the blight disease: insights from transcriptome analysis

scientific article (publication date: 19 March 2012)

Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules

scientific article

CottonGen: a genomics, genetics and breeding database for cotton research

scientific article

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

scientific article published on 15 November 2023

Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry

scientific article

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

scientific article

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study.

scientific article

Dissecting the Genetic Architecture of Aphanomyces Root Rot Resistance in Lentil by QTL Mapping and Genome-Wide Association Study

scientific article published on 20 March 2020

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure

scientific article published on 02 May 2022

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice

scientific article published on 23 May 2011

Massive-scale gene co-expression network construction and robustness testing using random matrix theory

scientific article

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

scientific article

Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms

scientific article

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

scientific article

The Genome Database for Rosaceae (GDR): year 10 update

scientific article

The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks

scientific article published on 28 July 2010

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

scientific article

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases

scientific article (publication date: 2013)

Tripal: a construction toolkit for online genome databases

scientific article

List of works by Stephen Ficklin

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Chestnut resistance to the blight disease: insights from transcriptome analysis

Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules

CottonGen: a genomics, genetics and breeding database for cotton research

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study.

Dissecting the Genetic Architecture of Aphanomyces Root Rot Resistance in Lentil by QTL Mapping and Genome-Wide Association Study

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice

Massive-scale gene co-expression network construction and robustness testing using random matrix theory

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

The Genome Database for Rosaceae (GDR): year 10 update

The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases

Tripal: a construction toolkit for online genome databases