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List of works by Isheng J Tsai

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

scientific article published on 7 June 2012

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

scientific article

An expressed, endogenous Nodavirus-like element captured by a retrotransposon in the genome of the plant parasitic nematode Bursaphelenchus xylophilus

scientific article

Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics

scientific article

Biology and genome of a newly discovered sibling species of Caenorhabditis elegans

scientific article published in Nature Communications

C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8

scientific article published in 2022

Comparative and population genomic landscape of Phellinus noxius: A hypervariable fungus causing root rot in trees.

scientific article

Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants

scientific article

Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade

scientific article

Conservation of recombination hotspots in yeast

scientific article

Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states

scientific article

Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi

scientific article

Enhancement of microbial 2,4,6-trinitrotoluene transformation with increased toxicity by exogenous nutrient amendment

scientific article

Estimating the Fitness Effects of New Mutations in the Wild Yeast Saccharomyces paradoxus

scientific article published on 16 June 2015

Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster

scientific article

Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus

scientific article published on 01 October 2019

Extensive sampling of <i>Saccharomyces cerevisiae</i> in Taiwan reveals ecology and evolution of predomesticated lineages

scientific article published on 31 March 2022

Genetic Differentiation and Spatial Structure of Phellinus noxius, the Causal Agent of Brown Root Rot of Woody Plants in Japan

scientific article published on 29 October 2015

Genetic and Molecular Basis of Drug Resistance and Species-Specific Drug Action in Schistosome Parasites

scientific article

Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks

scientific article published on 01 May 2022

Genome watch: Honey, I shrunk the mimiviral genome

scientific article published on 11 July 2011

Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits.

scientific article published on 23 October 2015

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

scientific article

Germline transgenesis and insertional mutagenesis in Schistosoma mansoni mediated by murine leukemia virus

scientific article

Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern

scientific article

HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni.

scientific article

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

scientific article published on 13 April 2010

Inferring synteny between genome assemblies: a systematic evaluation

scientific article published on 30 January 2018

Mycena genomes resolve the evolution of fungal bioluminescence

scholarly article

Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungi

scientific article published on 11 March 2020

Popmarker: Identifying Phylogenetic Markers at the Population Level.

scientific article published on 16 August 2017

Population genomics of domestic and wild yeasts

scientific article

Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle

scholarly article

Possible stochastic sex determination in Bursaphelenchus nematodes

scientific article published on 11 May 2022

Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle

article

Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

scientific article published on 09 January 2019

Structure and Diversity of Soil Bacterial Communities in Offshore Islands

scientific article published on 20 March 2019

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

scientific article

The first green revolution

scientific article

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

scientific article

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

scientific article

The genome of Onchocerca volvulus, agent of river blindness

scientific article published on 21 November 2016

The genome of Strongyloides spp. gives insights into protein families with a putative role in nematode parasitism.

scientific article

The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion

scientific article

The genomes of four tapeworm species reveal adaptations to parasitism

scientific article

The genomic basis of parasitism in the Strongyloides clade of nematodes

scientific article published in February 2016

Tracing genomic divergence of Vibrio bacteria in the Harveyi clade.

scientific article published on 19 March 2018

Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus

scientific article published on April 2015

Understanding and using fungal bioluminescence–Recent progress and future perspectives

scientific article published in February 2022

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction

scientific article

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