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List of works by Neil D. Young

A blow to the fly - Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology.

scientific article published on March 2016

A deep exploration of the transcriptome and "excretory/secretory" proteome of adult Fascioloides magna.

scientific article

A novel Glaesserella sp. isolated from severe respiratory infections in pigs has a mosaic genome with virulence factors putatively acquired by horizontal transfer.

scientific article published on 23 March 2018

A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep.

scientific article published on 25 April 2017

A portrait of the transcriptome of the neglected trematode, Fasciola gigantica--biological and biotechnological implications

scientific article published in 2011

A practical Java tool for small-molecule compound appraisal

scientific article (publication date: 2015)

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

scientific article

A systematic study towards evolutionary and epidemiological dynamics of currently predominant H5 highly pathogenic avian influenza viruses in Vietnam

scientific article published on 22 May 2019

Advances in kinome research of parasitic worms - implications for fundamental research and applied biotechnological outcomes

scientific article published on 22 February 2018

An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features

scientific article published on 08 June 2019

Analyses of Compact Trichinella Kinomes Reveal a MOS-Like Protein Kinase with a Unique N-Terminal Domain

scientific article published on 13 July 2016

Analysis of nucleotide variation within the triose-phosphate isomerase gene of Giardia duodenalis from sheep and its zoonotic implications

scientific article published in January 2010

Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions

scientific article published on 31 January 2014

Apoptosis in schistosomes: toward novel targets for the treatment of schistosomiasis

scientific article published on 03 January 2014

Ascaris suum draft genome

scientific article

Best practice data life cycle approaches for the life sciences

article

Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes

scientific article published on 17 July 2014

Bioinformatics meets parasitology.

scientific article published on May 2012

CAP protein superfamily members in Toxocara canis

scientific article published on 24 June 2016

Characterisation of nitric oxide synthase in three cnidarian-dinoflagellate symbioses

scientific article

Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation

scientific article published on 15 February 2022

Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule

scientific article published on 03 March 2022

Combined proteomic and transcriptomic interrogation of the venom gland of Conus geographus uncovers novel components and functional compartmentalization

scientific article published on 29 January 2014

Comparative Transcriptomic Exploration Reveals Unique Molecular Adaptations of Neuropathogenic Trichobilharzia to Invade and Parasitize Its Avian Definitive Host

scientific article

Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host

article

Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti

scientific article published on 31 May 2019

Complete mitochondrial genomes of the 'intermediate form' of Fasciola and Fasciola gigantica, and their comparison with F. hepatica

scientific article published on 31 March 2014

Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.).

scientific article published on 20 February 2008

Cryptic parasite revealed improved prospects for treatment and control of human cryptosporidiosis through advanced technologies

scientific article published on January 2011

Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism

scientific article published on 23 July 2019

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

scientific article published on 22 December 2010

Deep sequencing of the uterine immune response to bacteria during the equine oestrous cycle.

scientific article published on 14 November 2015

Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets

scientific article published on 4 December 2015

Deguelin exerts potent nematocidal activity via the mitochondrial respiratory chain

scientific article published on 7 July 2017

Description of an Atlantic salmon (Salmo salar L.) type II interleukin-1 receptor cDNA and analysis of interleukin-1 receptor expression in amoebic gill disease-affected fish

scientific article published on 13 March 2012

Development of a diagnostic PCR to detect Neoparamoeba perurans, agent of amoebic gill disease

scientific article published in April 2008

Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus

scientific article

Diversity in the intrinsic apoptosis pathway of nematodes

scientific article published on 28 August 2020

Effect of ovarian hormones on the healthy equine uterus: a global gene expression analysis

scientific article published on 20 May 2015

Elucidating the transcriptome of Fasciola hepatica - a key to fundamental and biotechnological discoveries for a neglected parasite

scientific article published on 16 December 2009

Expanded complement of Niemann-Pick type C2-like protein genes in Clonorchis sinensis suggests functions beyond sterol binding and transport

scientific article published on 23 January 2020

Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

scientific article published on 30 May 2019

Exploring molecular variation in Schistosoma japonicum in China

scientific article published in December 2015

Exploring the Fasciola hepatica tegument proteome

scientific article published on 5 October 2011

First insight into CD59-like molecules of adult Fasciola hepatica

scientific article published on 21 June 2014

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

scientific article published on 6 August 2010

Flatworms have lost the right open reading frame kinase 3 gene during evolution

scientific article published on 15 May 2015

Gene content evolution in the arthropods

scientific article published on 23 January 2020

Genetic blueprint of the zoonotic pathogen Toxocara canis

scientific article published on 4 February 2015

Genome and transcriptome of the porcine whipworm Trichuris suis

scientific article published in July 2014

Genome-Wide Analysis of Haemonchus contortus Proteases and Protease Inhibitors Using Advanced Informatics Provides Insights into Parasite Biology and Host–Parasite Interactions

scientific article published in 2023

Genomic resources for a unique, low-virulence Babesia taxon from China

scientific article published on 27 October 2016

Genomics of worms, with an emphasis on Opisthorchis viverrini - opportunities for fundamental discovery and biomedical outcomes

scientific article published on 12 January 2016

Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology

scientific article published on 21 December 2012

Harnessing Genomic Technologies to Explore the Molecular Biology of Liver Flukes-Major Implications for Fundamental and Applied Research

scholarly article by Neil D. Young published in August 2012

Harnessing the Toxocara Genome to Underpin Toxocariasis Research and New Interventions

scientific article published on 28 February 2016

High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus

article

High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing

scientific article published on 01 September 2019

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

scientific article

Improved genomic resources and new bioinformatic workflow for the carcinogenic parasite Clonorchis sinensis: Biotechnological implications

scientific article published on 15 February 2018

Improved strategy for the curation and classification of kinases, with broad applicability to other eukaryotic protein groups.

scientific article

In situ stress testing to identify Australian black tiger prawns (Penaeus monodon) free of gill-associated virus and Mourilyan virus.

scientific article published in June 2009

Infection with the carcinogenic human liver fluke, Opisthorchis viverrini

scientific article

Inference of Essential Genes of the Parasite Haemonchus contortus via Machine Learning

scientific article published on 27 June 2024

Innate immune genes in persistent mating-induced endometritis in horses.

scientific article published on 24 August 2017

Insights into SCP/TAPS proteins of liver flukes based on large-scale bioinformatic analyses of sequence datasets

scientific article (publication date: 2012)

Insights into the immuno-molecular biology of Angiostrongylus vasorum through transcriptomics--prospects for new interventions

scientific article published on 27 July 2013

Interactive online application for the prediction, ranking and prioritisation of drug targets in Schistosoma haematobium

scientific article published on 27 November 2018

Isolation of Tasmanian Rickettsia-like organism (RLO) from farmed salmonids: identification of multiple serotypes and confirmation of pathogenicity.

scientific article published on December 2016

Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

scientific article published on 16 May 2019

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

scientific article published on 25 June 2015

Making sense of genomes of parasitic worms: Tackling bioinformatic challenges

scientific article published on 5 March 2016

Massively parallel sequencing and analysis of the Necator americanus transcriptome

scientific article published on 11 May 2010

MicroRNAs of Toxocara canis and their predicted functional roles

scientific article published on 23 April 2016

Microbial community dynamics in a larval aquaculture system of the tropical rock lobster, Panulirus ornatus

article

Mitochondrial genomes of Trichinella species and genotypes – a basis for diagnosis, and systematic and epidemiological explorations

scientific article published on December 2014

Mitochondrial genomes of two Babesia taxa from sheep in China as a foundation for population genetic and epidemiological investigations

scientific article published on 11 November 2016

Mitochondrial genomic comparison of Clonorchis sinensis from South Korea with other isolates of this species

scientific article published on 22 February 2017

Molecular alterations during larval development of Haemonchus contortus in vitro are under tight post-transcriptional control

article

Molecular changes in Opisthorchis viverrini (Southeast Asian liver fluke) during the transition from the juvenile to the adult stage

scientific article published in 2012

Molecular evidence for distinct modes of nutrient acquisition between visceral and neurotropic schistosomes of birds

scientific article published in Scientific Reports

Neoparamoeba perurans is a cosmopolitan aetiological agent of amoebic gill disease

scientific article published on January 2008

Neoparamoeba perurans n. sp., an agent of amoebic gill disease of Atlantic salmon (Salmo salar).

scientific article

New research tools for urogenital schistosomiasis

scientific article published on 19 September 2014

Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium

scientific article published on 21 February 2022

Oestrous cycle-dependent equine uterine immune response to induced infectious endometritis

scientific article

Of monkeys and men: immunomic profiling of sera from humans and non-human primates resistant to schistosomiasis reveals novel potential vaccine candidates

scientific article published on 5 May 2015

Omega-1 knockdown in Schistosoma mansoni eggs by lentivirus transduction reduces granuloma size in vivo

scientific article published on 17 November 2014

Opisthorchis viverrini Draft Genome – Biomedical Implications and Future Avenues

scientific article published on 06 June 2018

Phylogenomic and biogeographic reconstruction of the Trichinella complex

scientific article published in February 2016

Pipeline for the identification and classification of ion channels in parasitic flatworms

scientific article published on 16 March 2016

Probing function and structure of trehalose-6-phosphate phosphatases from pathogenic organisms suggests distinct molecular groupings

scientific article published on 18 November 2016

Programmed knockout mutation of liver fluke granulin attenuates virulence of infection-induced hepatobiliary morbidity

scientific article published on 15 January 2019

Progress on the transcriptomics of carcinogenic liver flukes of humans--unique biological and biotechnological prospects

scientific article published on 29 July 2010

Prospects for Vector-Based Gene Silencing to Explore Immunobiological Features of Schistosoma mansoni

scientific article published on 23 March 2015

Proteomic analysis of Oesophagostomum dentatum (Nematoda) during larval transition, and the effects of hydrolase inhibitors on development

scientific article

Proteomic interrogation of venom delivery in marine cone snails: novel insights into the role of the venom bulb

scientific article published on 29 September 2010

Proteomics elucidates key molecules involved in exsheathment in vitro in Oesophagostomum dentatum

scientific article

RNA interference targeting cathepsin B of the carcinogenic liver fluke, Opisthorchis viverrini.

scientific article published on May 2011

Recent Progress in Transcriptomics of Key Gastrointestinal Nematodes of Animals - Fundamental Research Toward New Intervention Strategies

Reconstruction of the insulin-like signalling pathway of Haemonchus contortus

scientific article published on 3 February 2016

SOX9 duplication linked to intersex in deer

scientific article

SchistoDB: an updated genome resource for the three key schistosomes of humans

scientific article

Soil-transmitted helminths of humans in Southeast Asia--towards integrated control.

scientific article published on January 2011

Specialisation of the Venom Gland Proteome in Predatory Cone Snails Reveals Functional Diversification of the Conotoxin Biosynthetic Pathway

article

Support for the coevolution of Neoparamoeba and their endosymbionts, Perkinsela amoebae-like organisms

scientific article

The Battle Against Flystrike - Past Research and New Prospects Through Genomics.

scientific article published on 5 May 2017

The Haemonchus contortus kinome--a resource for fundamental molecular investigations and drug discovery

scientific article

The Opisthorchis viverrini genome provides insights into life in the bile duct

scientific article published on 9 July 2014

The apicoplast genomes of two taxonomic units of Babesia from sheep

scientific article published on 6 November 2016

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances

scientific article published on 31 July 2015

The complement of family M1 aminopeptidases of Haemonchus contortus--Biotechnological implications.

scientific article

The developmental phosphoproteome of Haemonchus contortus

scientific article published on 14 December 2019

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

scientific article

The mitogenome of <i>Halotydeus destructor</i> (Tucker) and its relationships with other trombidiform mites as inferred from nucleotide sequences and gene arrangements

scientific article published on 22 September 2021

The redlegged earth mite draft genome provides new insights into pesticide resistance evolution and demography in its invasive Australian range

scientific article published in 2022

The small RNA complement of adult Schistosoma haematobium.

scientific article

The transcriptome of Trichuris suis--first molecular insights into a parasite with curative properties for key immune diseases of humans

scientific article published on 24 August 2011

Time-Dependent Transcriptional Changes in Axenic Giardia duodenalis Trophozoites

scientific article published on 4 December 2015

Transcriptional analysis identifies key genes involved in metabolism, fibrosis/tissue repair and the immune response against Fasciola hepatica in sheep liver.

scientific article published on 25 February 2015

Transcriptomic Analysis of Long-Term Protective Immunity Induced by Vaccination With <i>Mycoplasma gallisepticum</i> Strain ts-304

scientific article published on 02 February 2021

Understanding Haemonchus contortus Better Through Genomics and Transcriptomics.

scientific article published on 5 April 2016

Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini

scientific article published in 2010

Use of a bioinformatic-assisted primer design strategy to establish a new nested PCR-based method for Cryptosporidium.

scientific article published on 23 October 2017

Whipworm kinomes reflect a unique biology and adaptation to the host animal

scientific article published on 9 June 2017

Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus

scientific article published on 09 September 2015

Whole-genome sequence of Schistosoma haematobium

scientific article

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

scientific article published on 23 January 2019

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