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List of works by Pasi K. Korhonen

A TGF-β type I receptor-like molecule with a key functional role in Haemonchus contortus development

article

A blow to the fly - Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology.

scientific article published on March 2016

An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features

scientific article published on 08 June 2019

Analyses of Compact Trichinella Kinomes Reveal a MOS-Like Protein Kinase with a Unique N-Terminal Domain

scientific article published on 13 July 2016

Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions

scientific article published on 31 January 2014

Best practice data life cycle approaches for the life sciences

article

Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes

scientific article published on 17 July 2014

CAP protein superfamily members in Toxocara canis

scientific article published on 24 June 2016

Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule

scientific article published on 03 March 2022

Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data

scientific article published on 01 April 2019

Comparative Transcriptomic Exploration Reveals Unique Molecular Adaptations of Neuropathogenic Trichobilharzia to Invade and Parasitize Its Avian Definitive Host

scientific article

Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host

article

Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti

scientific article published on 31 May 2019

Comparative transcriptomic analyses of male and female adult Toxocara canis.

scientific article published on 11 November 2016

Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism

scientific article published on 23 July 2019

Dauer signalling pathway model for Haemonchus contortus

scientific article published on 29 April 2019

Deguelin exerts potent nematocidal activity via the mitochondrial respiratory chain

scientific article published on 7 July 2017

Divergent Transcriptional Responses to Physiological and Xenobiotic Stress in Giardia duodenalis

scientific article published on 25 July 2016

Exploring molecular variation in Schistosoma japonicum in China

scientific article published in December 2015

Exploring the role of two interacting phosphoinositide 3-kinases of Haemonchus contortus.

scientific article

First record of a tandem-repeat region within the mitochondrial genome of Clonorchis sinensis using a long-read sequencing approach

scientific article published on 26 August 2020

Genetic blueprint of the zoonotic pathogen Toxocara canis

scientific article published on 4 February 2015

Genome and transcriptome of the porcine whipworm Trichuris suis

scientific article published in July 2014

Genomic resources for a unique, low-virulence Babesia taxon from China

scientific article published on 27 October 2016

Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology

scientific article published on 21 December 2012

Harnessing the Toxocara Genome to Underpin Toxocariasis Research and New Interventions

scientific article published on 28 February 2016

Hc-daf-2 encodes an insulin-like receptor kinase in the barber's pole worm, Haemonchus contortus, and restores partial dauer regulation

scientific article published on 12 April 2014

High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus

article

High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing

scientific article published on 01 September 2019

High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite

scientific article published in October 2020

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

scientific article

Improved genomic resources and new bioinformatic workflow for the carcinogenic parasite Clonorchis sinensis: Biotechnological implications

scientific article published on 15 February 2018

Inference of Essential Genes of the Parasite Haemonchus contortus via Machine Learning

scientific article published on 27 June 2024

Insights into the immuno-molecular biology of Angiostrongylus vasorum through transcriptomics--prospects for new interventions

scientific article published on 27 July 2013

Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

scientific article published on 16 May 2019

Low cost whole-organism screening of compounds for anthelmintic activity.

scientific article published on 5 March 2015

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

scientific article published on 25 June 2015

Making sense of genomes of parasitic worms: Tackling bioinformatic challenges

scientific article published on 5 March 2016

Marked mitochondrial genetic variation in individuals and populations of the carcinogenic liver fluke Clonorchis sinensis

scientific article published on 19 August 2020

MicroRNAs of Toxocara canis and their predicted functional roles

scientific article published on 23 April 2016

Mitochondrial genomes of Trichinella species and genotypes – a basis for diagnosis, and systematic and epidemiological explorations

scientific article published on December 2014

Mitochondrial genomes of two Babesia taxa from sheep in China as a foundation for population genetic and epidemiological investigations

scientific article published on 11 November 2016

Mitochondrial genomic comparison of Clonorchis sinensis from South Korea with other isolates of this species

scientific article published on 22 February 2017

Molecular alterations during larval development of Haemonchus contortus in vitro are under tight post-transcriptional control

article

Molecular characterization of the Haemonchus contortus phosphoinositide-dependent protein kinase-1 gene (Hc-pdk-1).

scientific article

Molecular evidence for distinct modes of nutrient acquisition between visceral and neurotropic schistosomes of birds

scientific article published in Scientific Reports

Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium

scientific article published on 21 February 2022

Phylogenomic and biogeographic reconstruction of the Trichinella complex

scientific article published in February 2016

Pipeline for the identification and classification of ion channels in parasitic flatworms

scientific article published on 16 March 2016

The Battle Against Flystrike - Past Research and New Prospects Through Genomics.

scientific article published on 5 May 2017

The Haemonchus contortus kinome--a resource for fundamental molecular investigations and drug discovery

scientific article

The Opisthorchis viverrini genome provides insights into life in the bile duct

scientific article published on 9 July 2014

The apicoplast genomes of two taxonomic units of Babesia from sheep

scientific article published on 6 November 2016

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances

scientific article published on 31 July 2015

The complement of family M1 aminopeptidases of Haemonchus contortus--Biotechnological implications.

scientific article

The developmental lipidome of Haemonchus contortus

scientific article published on 01 September 2018

The developmental phosphoproteome of Haemonchus contortus

scientific article published on 14 December 2019

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

scientific article

The mitogenome of <i>Halotydeus destructor</i> (Tucker) and its relationships with other trombidiform mites as inferred from nucleotide sequences and gene arrangements

scientific article published on 22 September 2021

The redlegged earth mite draft genome provides new insights into pesticide resistance evolution and demography in its invasive Australian range

scientific article published in 2022

The small RNA complement of adult Schistosoma haematobium.

scientific article

Time-Dependent Transcriptional Changes in Axenic Giardia duodenalis Trophozoites

scientific article published on 4 December 2015

Trehalose 6-phosphate phosphatases of Pseudomonas aeruginosa.

scientific article published on 24 April 2018

Understanding Haemonchus contortus Better Through Genomics and Transcriptomics.

scientific article published on 5 April 2016

Use of a bioinformatic-assisted primer design strategy to establish a new nested PCR-based method for Cryptosporidium.

scientific article published on 23 October 2017

Whipworm kinomes reflect a unique biology and adaptation to the host animal

scientific article published on 9 June 2017

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

scientific article published on 23 January 2019

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